RNA id: CI01000046_00790248_00814884.mRNA


Basic Information

Item Value
RNA id CI01000046_00790248_00814884.mRNA
length 3451
RNA type mRNA
GC content 0.53
exon number 19
gene id CI01000046_00790248_00814884
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 790183 ~ 814884 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGATATGGAGCCTCATGAGAGTCTGGGAGTGAAGGGCGACTCGGGAGTGATGGGGGTGCTGGTGCCGAGCCCACGGAGTGAAGCGGTGACCCATGACCTAGAGGAATTGTCTCTCCAGCCCACTCAGAGCCTTCCACCCATTAAAGAGCGCAAGAACGAATTTTTAGTTTTGGTTACAGCGAAGAGGTTTTACTTCAGTGCATCACTAGATAGAAACATATTCACTGACGGAGCCGGAGCTGAACCGCTGCAGACAGCGCTCGCACTCGCTGAGAAATACACACCCACAAACACTCACACAGGCAGTCTAGAGACAGAGCCGGTGAAGGAACTTGTCGTAACAGTCTGGAATCAAACTCCACACTGGGGAATTTTCTGCCAGATCTCGCCATTTTGCCTCGGTCCTCATTTCCCACAGCAATCCATGGGACTCCAGACACGGAAACTGTCTGATCCGTCTCTCAGCTCCATGGCCTGCCTTGAAGTGGAGACCTTGAATGTCTGCAGGGATCTCAAACCTGAGCCAACATCCAGAGCTCTGCAAGCACCCATGAAGATACAGTCATCTGTCGAGTTGCTGAAATCTAGTTATGTCAACACAGCCCAGATTGGAAGTGAGGCCTGGAGCCACAAAAAGGTCAGTCAGGGTTCAGCAGAGAACATGAGGAATGACATCAGCTCAACAAACATGCTACAGTTGAGACTACAGCAGAGGCGCACACGCGAGCAGCTCGCAGACCAGGGCATCATGCCACCGCTGAAGACACCTGCAGTTTTTCATGAGCAGGTCAGAAGTTTGGAGAGGGCAAGGACTGAGAATTTCCTGAAACACAAAATCCGTAGCAGACCTGACCGTGCTGAACTTGTTCGTATGCACATTTTACAAGAAACCCATGCAGAGCCTTCTTTGCAAGCCACTCAGATGAAACTAAAGAGGGCACGTCTAGCAGATGATCTCAATGAGAAGATTGCACAGAGGCCGGGACCAATGGAACTGGTGGAGAAGAACATTCTGCCAGTTGAGATTGTTGGTGAACTGGATGTTTATAACTTCAATGAGGACAGCAGTGAAGCTCTGTCTCCAGAGCAGCCGGCTAGTCATGAGTCTCAGGGCTCTGCATCTTCTCCTATAGAAGCCAGACTGCCTGATCCATCCGCCGTATCGCCTCCGGTCGGCTCCAAACTCCAGTGCACAGACTTGCTGAGCAAAACATCAGTAGAAGATGGTCGAGTAATGCCTGCCACTCAGCTAGTCACTGCTGCTGCTCCCACAAAGCCAGGACCCACCCTTGTGAAGCAAAGCCAGCCCAAACAGTCCAGTGACAAGAGTCGAAGCAAGAAGAGTAAAGAACCCAAACCGCGGATTAAGAAGCTTAAGTATCACCAGTACATCCCGCCTGACCAAAAGCAGGAACCCAATGAAGCCCCGATGGACTCTGCATATGCCAGGCTTCTTCAACAACAGCAGCAGTTCCTGCAGCTCCAGATTCTCAGCCAACAACAACAGCATTACAACTACCAGACCATATTACCAGCACCACTCAAGCCAGTAGCTGAGTGTCAGAACAGCTGCCCCAACATCACCCTGAGCACCAGCCCAAGTCTTCCCTCTCCCATCATGGTGTCTCTGTCTAGTGCGGCTCCATCACGTCCCAACAACACTGTGACCAGTCGTAAAACCGGGTCTCTGCCTGCCAACTTAGATGAGATGAAGGTGGCTGAGCTTAAGATGGAGTTGAAATTGCGTGGACTTCCTGTGTCCGGCACTAAGACAGACCTCATAGAAAGGCTTAAGGCCCACCAGGAGAGCTCTCAGCCTGCTACAACCATGGATTCAAACATGTCCAAAACTGCTTTGCAGCCCGAAAGCATGAGCACAACTCCACCTGTGTCTCCTGAGAGGTCCGAGGCCTCCAACATCAGTATGGAGGACAGCAGAGACAGTCCCACCAAAGCTCTATGCACTTTGTCTCCAGCCCACCCTCCGACAGGCACCTCACCCCTCAAACCCACTCCTGAAGACATGACCATGGACATCAAGGTGTCAGAAAAAGACCAGCGCCTCCATGAGAAGGAGCGTCAGATTGAGGAGCTGATGCGTAAGCTGGAGCAGGAGCAGCGGCTGGTGGAGGAGCTGAAGATGCAGCTGGAGGTGGAGAAAAGGAGTCAGCAAGGTGGAGGGCAGCAGCCTGAACCCAATCAATTAGTCCAGGTCAAAGTGGAGAACGGCGCCGCCCCTAGCTGCAACTCCGAGCGGAGTCCCCTGCCGCAAACTACAGGTGTGAAACAGGAAGAGCCTCATGGCCAGATGCACCACACCCCAGTCCAGCAGTTCTATATCAACACCCAGCAAGTCCCTCAAGTGCTGCATCAGCAGACTCTGATCAACACTCAGCCTGCCACACAAATTCTGTTGCCTATCAGCCTGCCCAGCAACCCCGTCAGCACACAGGCGCAGAACGTTCTCCAAACAACAATGCCCAGTTTGGCTCAAAGCATCATACAAACGCCACTTCTGCAAACACAGACGTCCAATAATACAATGTTACAACAGCATTCAAATCAGACACCATCTCCACCTCAGGCTTTACCCCTGTGTGGAAGCTCACCTTCTGGGTTTGAGTACAGGCAGAACCAGAACCAGCCCATGCCAGACATGCCCCAGTGCTTCCTCAACAACTCGCCTAGAGTCTCGCCCAGACACACAACCCCAAATGGACCCATGAACAAACCTCCATCGCCTTGTCAGCTCAACTATATCCTTCAGCCATCAACGTTTCCCGATCACCTCAGCCCAAAGAGCAAAGACCCACCCCGCTACGAGGAGGCCGTCAAACAGACCAGAGGTCTACAAGCCACAATGCAGGTTCCAACTGCCACCAGTCAGCACATGGACGATTTATTTGACATTTTGATTGAGAGTGGAGAAATATCCCCTCTGGCCAGGCATGATCCTTCTCTCGATAAACTTCTGCCAGTGACAGTAAACATCACCACCCTGCCGATCAACACTGTGCTGTCACGTCCTCCCCCACAGATACATGTTGCCCGCACGCCCAATCAGACCCAAGCGCCTCCACCCAGCCAGGTGGCCCTGGCCTCCGATAACCAATTGGAGGCCCTGCTGGAGGACGCTGAGCCGCAGACCCAGAGACTGATGGAGGAGTTCAAACACCAGCTGCTGGAGCGGCCTCACTCCCCAATGGACACTTCAGATCTGACCTTCTCTGACACACCGCCCTCCACTCTCCATCTACAAGACACCGGCCTTGATAACATGGAGTGGTTGGACCTTACGATCCCTGGTCCTGCTGGGATCTCCTCTCCGACAGTCTTTTCATCTGATTTCTTGGACTCGACTGATCTACAGTTGCACTGGGACTGAGCTCACAAAGTGATCAAGATAGGAGACGTTCTGAAAAGATCTGTTGACCCTGAGGGACCACTAAA

Function

GO:      GO:0001105, GO:0005634, GO:0051145

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221592 lncRNA downstream 9890 774434 ~ 780293 (-) False CI01000046_00777923_00780186
TU221590 lncRNA downstream 9890 774581 ~ 780293 (-) False CI01000046_00777923_00780186
TU221635 lncRNA downstream 20077 764897 ~ 770106 (-) True G195115
TU221621 lncRNA downstream 53627 735070 ~ 736556 (-) True G195101
TU221800 lncRNA downstream 67987 704433 ~ 722196 (-) False G195268
TU221813 lncRNA upstream 24480 839364 ~ 839703 (-) True G195280
TU221815 lncRNA upstream 25543 840427 ~ 840692 (-) True G195282
TU221843 lncRNA upstream 58224 873108 ~ 933608 (-) True G195307
TU221870 lncRNA upstream 88492 903376 ~ 903776 (-) True G195333
TU221950 lncRNA upstream 269960 1084844 ~ 1085092 (-) True G195403
CI01000046_00777923_00780186.mRNA mRNA downstream 9997 777672 ~ 780186 (-) False CI01000046_00777923_00780186
CI01000046_00749734_00763064.mRNA mRNA downstream 26702 749684 ~ 763481 (-) True CI01000046_00749734_00763064
CI01000046_00702360_00703954.mRNA mRNA downstream 86229 701939 ~ 703954 (-) True CI01000046_00702360_00703954
CI01000046_00690567_00697727.mRNA mRNA downstream 90311 690140 ~ 699872 (-) True CI01000046_00690567_00697727
CI01000046_00665298_00665879.mRNA mRNA downstream 124304 665298 ~ 665879 (-) True CI01000046_00665298_00665879
CI01000046_01047300_01066367.mRNA mRNA upstream 232325 1047209 ~ 1066367 (-) True CI01000046_01047300_01066367
CI01000046_01074910_01076076.mRNA mRNA upstream 259914 1074798 ~ 1076424 (-) True CI01000046_01074910_01076076
CI01000046_01098117_01099160.mRNA mRNA upstream 282374 1097258 ~ 1099160 (-) True CI01000046_01098117_01099160
CI01000046_01167146_01194022.mRNA mRNA upstream 352144 1167028 ~ 1194022 (-) True CI01000046_01167146_01194022
CI01000046_01236373_01241067.mRNA mRNA upstream 421108 1235992 ~ 1241067 (-) True CI01000046_01236373_01241067
TU221589 other downstream 9890 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 114055 670736 ~ 676128 (-) True G195098
TU221615 other downstream 363857 407423 ~ 426326 (-) False G195097
TU221614 other downstream 363857 407470 ~ 426326 (-) True G195097
TU221564 other downstream 724272 63699 ~ 65911 (-) True G195066
TU223112 other upstream 1353382 2168266 ~ 2168644 (-) True G196463
TU224633 other upstream 2051375 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU225032 other upstream 2942739 3757623 ~ 3800101 (-) False G198265
TU225919 other upstream 5282475 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 5549294 6364178 ~ 6375406 (-) True G199014

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050536 True 5295 mRNA 0.47 15 NC_007114.7 46315016 ~ 46365456 (+)
rainbow trout (Oncorhynchus mykiss) TU1339561 True 864 lncRNA 0.61 1 NC_048577.1 40342475 ~ 40343338 (-)