RNA id: TU221158


Basic Information

Item Value
RNA id TU221158
length 2579
lncRNA type read_through
GC content 0.43
exon number 1
gene id CI01000046_00499754_00526138
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 499754 ~ 528550 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTCCTGTAGTTGCGGTATCAGAAGTGTCTGGGGAAGACCGGCTCCTCGGCTCCGTCCTCTAGCGACTCCGTCACCCGCCGCGTAACGTCCAGCGTGAAGCGGGGCGTCCAATCAATCATAGACACTCTGAAAAAGAAGCCCGCCCCCGAGGTTCCCCACCAATGACGGAACAGAACAGCTGTGATGGACAGCAGGTGTGTGTGCGTGTGTGTATTTACTGATGCAGCCGAGAAGAGCAACACAACATAACAAAAAAAGACAAAAAGTGTAACGCGAGATGAAGGAGATGTCAGTGTGCGTAACGAGAAGCATTTCGAACGACTGTCCTGAATGAAGCATGCCTCTGCCTTACACTAACACATTTTCACTGAAGTATTTCGAGGCCGTCAGAGTTCATGTCTCACCGATCCCGTCACGCTCAGATCAATGTAACTCTTTACACGCGTGACCTGGATTCAAGCTCCAGTCTGATTTGTGCCATAAGTGTGTTTCATTTCAAACCACCCACTCATTCAAAGCGACTTGCACACTTGGGAAATTGGATCCTTTGAAATTTTGTTCTCTTTCTGCAAGAAATTTAGAGGGAATTTTCTGGTGTTGGGTATTGGGAAAGGAACGTGTGTGTAAAATGTTTCAGTGCATCAAGCACACAGCCTGACGGATCAGATCATGATGTTCAGTGGGAATATCGTAACACACAGTCTGTATATCATCTGCTCAGATCGATACTGTAATGCCGAGCGAAATGGGAATTTTCTGACCACACAAATACACATGCACCTCATTTAAACACTTAGGCCTGGAAGATTCCCTGTGCAAGTACGCAAATGCAGACGTGAATGCTTGGCAGACGTGCACTCCTTTTGTACATACGCAACACAAGAGACCTCAGTACTGTCCTTCAAATGTCTAAATGACATTAAACCAGATGTTTTATTCAGATGTCCAGCTAAAGACATGTTCACGTTACTCAACATTAAAGCCTGACATACAAAATACTAGTTGAAATGGAAGTTTATTGAACATCATATTTGATCTTTACTAGAAGATGTTGAAACAGTATCGATTCGATTTGTAAAATCTGAATAAAATTCAACAATGATTCAACATCAGCAAACCATCATATTTTTCTACCGTTGTCTTTAAAGATCAACATTGTCTGAACACAGTTCCTCACTGTAGAGGACGTCGGGTTACGCTAATGCCCTCTATAACTGCCTTTGTGGCAATGCTGAAGATGCAAAACGTACTTGCATTGCATTATGAATCGTGGAACGCAGTGATGCATGAACTCGAGCTTGCTTAGCTAAAAGATTTTGTGTACTTGCATAGAGCGTTTCAGACTTGAGATGAGCCACACACGCACACATCGAGCCCCTGCTACAGTATGTCGAGAATAAACAAACACAGGAATGTTATTTCTCACAAAATGGTATTTTAAAACCCAGATCAACCACTAAGACACTCATTTTTACACCATATTAATGTAACATGTTGTGGAAATAAATTACATCACAAAAAAAAGTGTCTGTCCTTGTTTTATTTGCATGCATGTTCCAAATGACATTGGAAAATATGCTTGTTTTGATGGCAGTGACATTTAAATGGTAAAGTTTAGTAATAATAATGAGTTAGATGGGATGTCTAATAAAGATTAAAGGTCTTAAATACTGAGATAAGAGTAAAATACTGACGGTAGCCGCACTAATGTGTGTGTCAGAGCCATGGCCGCAGATGATTCAGTCTCGCTCTGAACGCCGTTTGGCTTCGAGGGAGAGCCGGTGTCAAGTTACTCCACTGCAGGTGGGTGTGGGCGGGGTTTGTAAGGGCGTGGCTCCGCCTCTGTGGAAGAAGACTGTCACTTGACAACAGAACAGGAGGAAACGTGACAGTCGCCGGCCGCAGCACTTCATGTCGGCCTTTAGGTGGCGCAACTGCCACGGAGGAGTGAATGTCATTTGCAGATACTGCAGCCGCGTTCAAACCAGTCAAACTGTTACAGTATAAACTGGAGAAAGAGGTGGGGTTAGGGGTGGAGCCTGTTGTATTAAGGGTGGAGTCTGTGGTGTTAGGGGTGGAGCCTGTGGTGTTAGGGGTGGAGCCTGTCTTGGAGAACACGCCCTGAGAGAGACGTCGAGAACTACAGGGTTTATCTGTGGAGATACAGAAGTAAACAGGAAGTTAGGTTAGTTTTCCTCAGTGGTTTACTCTGAAAAAAACATTACCGTTAACGTGTTAACTGTCAGTGTAGCTTTTTTAATAGCCTTTTTCCTCATCACATATTTTAATAATCACAAATTGCGTATCATTTGAAAGCTTCACTCAAAATTCATCCTGTGAAAACCTTTTTGAAAACAGACATTGCGTTACTCAGGAAACAGTACTTTAGCGGCTCAATTTTTGTGATATCAACTTCAAATTTGGAACACAACTTGGTGAGAGATATGGCTTCAGATTTTGTAAAATATGTAAAAGAAAAACAGACCAATCTTAGGTCTGTATTCCAAAGCATTCATGAATTATGTCCACTTAAGTTCAGATCTGTGCTCAAAAGCCACAGACAGTTAACAGGTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221198 lncRNA upstream 38632 486933 ~ 487340 (+) True G194762
TU221162 lncRNA upstream 58689 464614 ~ 467283 (+) True G194727
TU221151 lncRNA upstream 65627 458008 ~ 460345 (+) False G194721
TU221143 lncRNA upstream 79215 415077 ~ 415194 (+) True G194718
TU221185 lncRNA upstream 100548 407504 ~ 425424 (+) True G194750
TU221217 lncRNA downstream 59575 588125 ~ 588490 (+) True G194779
TU221220 lncRNA downstream 61020 589570 ~ 619405 (+) True G194780
TU221248 lncRNA downstream 133437 661987 ~ 664124 (+) True G194803
TU221266 lncRNA downstream 148835 677385 ~ 677650 (+) True G194809
TU221174 lncRNA downstream 153153 681703 ~ 682678 (+) True G194739
CI01000046_00494421_00496860.mRNA mRNA upstream 29014 494421 ~ 496958 (+) True CI01000046_00494421_00496860
CI01000046_00492034_00493262.mRNA mRNA upstream 32634 492034 ~ 493338 (+) True CI01000046_00492034_00493262
CI01000046_00477221_00481241.mRNA mRNA upstream 44729 477221 ~ 481243 (+) True CI01000046_00477221_00481241
CI01000046_00436111_00443677.mRNA mRNA upstream 80474 436111 ~ 445498 (+) False CI01000046_00436111_00443677
CI01000046_00107578_00163060.mRNA mRNA upstream 362837 104109 ~ 163135 (+) True CI01000046_00107578_00163060
CI01000046_00670755_00673139.mRNA mRNA downstream 142205 670755 ~ 673447 (+) True CI01000046_00670755_00673139
CI01000046_00770575_00774675.mRNA mRNA downstream 242025 770575 ~ 776269 (+) True CI01000046_00770575_00774675
CI01000046_00781088_00781355.mRNA mRNA downstream 252538 781088 ~ 781355 (+) True CI01000046_00781088_00781355
CI01000046_00784993_00786387.mRNA mRNA downstream 256095 784645 ~ 787080 (+) True CI01000046_00784993_00786387
CI01000046_00893353_00931079.mRNA mRNA downstream 364749 893299 ~ 932443 (+) True CI01000046_00893353_00931079
TU221152 other upstream 65627 458008 ~ 460345 (+) True G194721
TU221488 other downstream 632607 1161157 ~ 1161690 (+) True G195003
TU222216 other downstream 1010944 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 1344245 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 1344245 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1911367 2439917 ~ 2440072 (+) False G196108

Expression Profile