RNA id: TU221217


Basic Information

Item Value
RNA id TU221217
length 366
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G194779
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 588125 ~ 588490 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGTGAACCGGCGGTGAAGGAGTGGAGACGGTGTTTGCAGGCGTGATCGCTGGAGCGGGTGATGGTGAACTGGAGGTGAGTGCTCGGCGCAGGGCGTCCACGAGCTCTTGAAACGGGTCCGGGTGGCTCATGCTGGTATCTTGCAGTTATGGTCCGGTCTTCTGTTACAGTACAGAAGGGACCGAGGCAGATATAACAGGTAGAGATGTTTATTGATACCAACATGAGCAAACAGTTGTGCAGGTGAATGAGATGTGATGGAATGAATATAGTGGAGAGTGCAGAGAAGTGATACTGTCCTTGTTGATTGTAGACACGGGTGGATTCGGAAGACGCTGGAGAAACTTGACACTGGAGACCAGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221158 lncRNA upstream 59575 525972 ~ 528550 (+) True CI01000046_00499754_00526138
TU221157 lncRNA upstream 60640 525972 ~ 527485 (+) False CI01000046_00499754_00526138
TU221198 lncRNA upstream 100785 486933 ~ 487340 (+) True G194762
TU221162 lncRNA upstream 120842 464614 ~ 467283 (+) True G194727
TU221151 lncRNA upstream 127780 458008 ~ 460345 (+) False G194721
TU221220 lncRNA downstream 1080 589570 ~ 619405 (+) True G194780
TU221248 lncRNA downstream 73497 661987 ~ 664124 (+) True G194803
TU221266 lncRNA downstream 88895 677385 ~ 677650 (+) True G194809
TU221174 lncRNA downstream 93213 681703 ~ 682678 (+) True G194739
TU221268 lncRNA downstream 95298 683788 ~ 684595 (+) True G194810
CI01000046_00499754_00526138.mRNA mRNA upstream 61067 499754 ~ 527058 (+) False CI01000046_00499754_00526138
CI01000046_00494421_00496860.mRNA mRNA upstream 91167 494421 ~ 496958 (+) True CI01000046_00494421_00496860
CI01000046_00492034_00493262.mRNA mRNA upstream 94787 492034 ~ 493338 (+) True CI01000046_00492034_00493262
CI01000046_00477221_00481241.mRNA mRNA upstream 106882 477221 ~ 481243 (+) True CI01000046_00477221_00481241
CI01000046_00436111_00443677.mRNA mRNA upstream 142627 436111 ~ 445498 (+) False CI01000046_00436111_00443677
CI01000046_00670755_00673139.mRNA mRNA downstream 82265 670755 ~ 673447 (+) True CI01000046_00670755_00673139
CI01000046_00770575_00774675.mRNA mRNA downstream 182085 770575 ~ 776269 (+) True CI01000046_00770575_00774675
CI01000046_00781088_00781355.mRNA mRNA downstream 192598 781088 ~ 781355 (+) True CI01000046_00781088_00781355
CI01000046_00784993_00786387.mRNA mRNA downstream 196155 784645 ~ 787080 (+) True CI01000046_00784993_00786387
CI01000046_00893353_00931079.mRNA mRNA downstream 304809 893299 ~ 932443 (+) True CI01000046_00893353_00931079
TU221152 other upstream 127780 458008 ~ 460345 (+) True G194721
TU221488 other downstream 572667 1161157 ~ 1161690 (+) True G195003
TU222216 other downstream 951004 1542931 ~ 1563337 (+) True G195643
TU222565 other downstream 1284305 1872795 ~ 1873083 (+) False G195965
TU222567 other downstream 1284305 1872795 ~ 1959148 (+) True G195965
TU222725 other downstream 1851427 2439917 ~ 2440072 (+) False G196108

Expression Profile