RNA id: TU224741


Basic Information

Item Value
RNA id TU224741
length 221
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G198014
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3049620 ~ 3049840 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAATAGGTCTTTTAATATTGCATGCTTTTTTTTTTTTTCCTTCAAAATCGAGATTAAACTGTGAAACTCTATGGAATGAAGGATCTGGAGCAACAATAAATCTTCTGTCTTTACTAGCTGCTAAAACATAATACACAGCTGTTTTTTAATACTTCATCGCTCCGCACACACTGGCTACGTAATTAAAGCTCCACTCACCAATTTTTGCTAATTAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224740 lncRNA downstream 101 3049101 ~ 3049519 (-) True G198013
TU224739 lncRNA downstream 1195 3048179 ~ 3048425 (-) True G198012
TU224729 lncRNA downstream 32791 3016460 ~ 3016829 (-) True G198002
TU224705 lncRNA downstream 82644 2966752 ~ 2966976 (-) True G197978
TU224703 lncRNA downstream 87374 2961990 ~ 2962246 (-) True G197976
TU224747 lncRNA upstream 7890 3057730 ~ 3057946 (-) True G198020
TU224771 lncRNA upstream 132245 3182085 ~ 3211294 (-) True G198044
TU224949 lncRNA upstream 348129 3397969 ~ 3398865 (-) True G198190
TU225027 lncRNA upstream 493460 3543300 ~ 3543526 (-) True G198264
TU225073 lncRNA upstream 501659 3551499 ~ 3552690 (-) True G198281
CI01000046_02972183_02978771.mRNA mRNA downstream 70849 2972183 ~ 2978771 (-) True CI01000046_02972183_02978771
CI01000046_02873360_02887683.mRNA mRNA downstream 161937 2872981 ~ 2887683 (-) True CI01000046_02873360_02887683
CI01000046_02866255_02867695.mRNA mRNA downstream 181925 2866070 ~ 2867695 (-) False CI01000046_02866255_02867695
CI01000046_02480126_02480593.mRNA mRNA downstream 567679 2479876 ~ 2481941 (-) True CI01000046_02480126_02480593
CI01000046_02458763_02477098.mRNA mRNA downstream 572522 2458472 ~ 2477098 (-) True CI01000046_02458763_02477098
CI01000046_03067420_03068783.mRNA mRNA upstream 17527 3067367 ~ 3068783 (-) True CI01000046_03067420_03068783
CI01000046_03080433_03083966.mRNA mRNA upstream 30593 3080433 ~ 3084292 (-) True CI01000046_03080433_03083966
CI01000046_03095399_03129278.mRNA mRNA upstream 45113 3094953 ~ 3129652 (-) True CI01000046_03095399_03129278
CI01000046_03140684_03161621.mRNA mRNA upstream 90542 3140382 ~ 3161621 (-) True CI01000046_03140684_03161621
CI01000046_03606941_03615212.mRNA mRNA upstream 556877 3606717 ~ 3615212 (-) True CI01000046_03606941_03615212
TU224633 other downstream 181826 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU223112 other downstream 880976 2168266 ~ 2168644 (-) True G196463
TU221589 other downstream 2269327 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 2373492 670736 ~ 676128 (-) True G195098
TU221614 other downstream 2623294 407470 ~ 426326 (-) True G195097
TU225032 other upstream 707783 3757623 ~ 3800101 (-) False G198265
TU225919 other upstream 3047519 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 3314338 6364178 ~ 6375406 (-) True G199014
TU226000 other upstream 3528140 6577980 ~ 6592925 (-) False G199130
TU226079 other upstream 3776845 6826685 ~ 6830453 (-) True G199181

Expression Profile