RNA id: TU225073


Basic Information

Item Value
RNA id TU225073
length 511
lncRNA type antisense_over
GC content 0.28
exon number 2
gene id G198281
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3551499 ~ 3552690 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAATATTGCATTGGTCCACTTGTTCTTGCATGTGCTCATAATTTCTTTGTATGACAGCCTGGCCAAAAATAATTTGAAATAATTTGAAATTTATTGGGTAACAAATGAACACTTGTCATTTACAGATACAATAACAACAAGTTACATTGCATTCATTGCTTATATTTTGTTAATTAAATGTGTACAATTATACATTTTTTAATAATGTATTATTTTTACATTCCAAACTGTGTAAAACATGAATGAATCAGGAAGAGGTCAAGGCCCAGCAAACCATGAGCACCATAAATCTAAAAGCATGTAAAAAAAAAAAAAAAGGCAGTAAATATATCTATGATATTTTTAAAATGAAACTATACTGTATGCAGTTTTTCTTATACTATATAACTTGTATAACATCTACGCAATTATGTTGAAATGATCAGTATTTTAATTATTGTTTTTCCTTGTGAGGTCTTGGAATAAACTTCAGTGTGATGGGAACCTTCGGCTGAAAAATAACATTCATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225027 lncRNA downstream 7973 3543300 ~ 3543526 (-) True G198264
TU224949 lncRNA downstream 152634 3397969 ~ 3398865 (-) True G198190
TU224771 lncRNA downstream 340205 3182085 ~ 3211294 (-) True G198044
TU224747 lncRNA downstream 493553 3057730 ~ 3057946 (-) True G198020
TU224741 lncRNA downstream 501659 3049620 ~ 3049840 (-) True G198014
TU225099 lncRNA upstream 70 3552760 ~ 3554252 (-) True G198307
TU225110 lncRNA upstream 7541 3560231 ~ 3560540 (-) True G198318
TU225081 lncRNA upstream 13254 3565944 ~ 3566155 (-) True G198289
TU225030 lncRNA upstream 112553 3665243 ~ 3800101 (-) False G198265
TU225083 lncRNA upstream 167329 3720019 ~ 3721789 (-) True G198291
CI01000046_03140684_03161621.mRNA mRNA downstream 389878 3140382 ~ 3161621 (-) True CI01000046_03140684_03161621
CI01000046_03095399_03129278.mRNA mRNA downstream 421847 3094953 ~ 3129652 (-) True CI01000046_03095399_03129278
CI01000046_03080433_03083966.mRNA mRNA downstream 467207 3080433 ~ 3084292 (-) True CI01000046_03080433_03083966
CI01000046_03067420_03068783.mRNA mRNA downstream 482716 3067367 ~ 3068783 (-) True CI01000046_03067420_03068783
CI01000046_02972183_02978771.mRNA mRNA downstream 572728 2972183 ~ 2978771 (-) True CI01000046_02972183_02978771
CI01000046_03606941_03615212.mRNA mRNA upstream 54027 3606717 ~ 3615212 (-) True CI01000046_03606941_03615212
CI01000046_03635227_03641081.mRNA mRNA upstream 82290 3634980 ~ 3641081 (-) True CI01000046_03635227_03641081
CI01000046_03643306_03647935.mRNA mRNA upstream 89492 3642182 ~ 3647935 (-) True CI01000046_03643306_03647935
CI01000046_03761959_03768003.mRNA mRNA upstream 207761 3760451 ~ 3768116 (-) True CI01000046_03761959_03768003
CI01000046_03777712_03789322.mRNA mRNA upstream 224901 3777591 ~ 3789340 (-) False CI01000046_03777712_03789322
TU224633 other downstream 683705 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU223112 other downstream 1382855 2168266 ~ 2168644 (-) True G196463
TU221589 other downstream 2771206 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 2875371 670736 ~ 676128 (-) True G195098
TU221614 other downstream 3125173 407470 ~ 426326 (-) True G195097
TU225032 other upstream 204933 3757623 ~ 3800101 (-) False G198265
TU225919 other upstream 2544669 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 2811488 6364178 ~ 6375406 (-) True G199014
TU226000 other upstream 3025290 6577980 ~ 6592925 (-) False G199130
TU226079 other upstream 3273995 6826685 ~ 6830453 (-) True G199181

Expression Profile