RNA id: CI01000051_03107566_03109607.mRNA


Basic Information

Item Value
RNA id CI01000051_03107566_03109607.mRNA
length 672
RNA type mRNA
GC content 0.47
exon number 7
gene id CI01000051_03107566_03109607
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3107566 ~ 3109730 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAGTTCAGATCCTTGGTGACAAATTTCCCTACAAACTGATCTCTAAGAAGATTGACTTGCCTGAATATCAGGGAGAACCAGATGAGATTTCTATCCAGAAGTGTCAAGAAGCAGCAAGGCAGGTGGATGGGCCAGTGCTGGTGGAGGACACATGTCTGTGCTTCAGGGCACTAGGAGGACTACCAGGACCTTACATAAAATGGTTCTTGGATAAACTGAAGCCTGAAGGATTGTATAAATTGCTGGCAGGTTTTGAAGATAAATCAGCCTGGGCTCTGTGTACATTTGCTTTCTGTGCTGGAAAAGAGGAGCCAGTTCAGCTGTTCAGAGGAATAACCGAGGGCCGTATTGTTGAGCCCAGGGGCCCAAGGGATTTTGGATGGGATCCTTGTTTCCAGCCTGATGGTTATGAAAAAACTTATGCTGAGCTCCCTAAAGAAGTGAAGAACAGCATCTCCCATCGGTACCGCGCCCTGGCAGCCTTGTCGGAACACTTCTCCCAGCTTAACAACGCACCGGAGACCAAGCGCACAAAACACCAAGACTGAGTTCTGTTCTCTTTCCAAGCAGAATCAGCCAATCAGAGCTCAGTTTGGCTCTGGCTCAAACGAATGCACTGATGTGCTGGTCTTAAACGGTTTAAAATGTACTCCATCCTCTTTGTCTTTTAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01519 ITPA; inosine triphosphate pyrophosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248394 lncRNA upstream 9777 3096824 ~ 3097789 (+) True G219015
TU248370 lncRNA upstream 34270 3071293 ~ 3073296 (+) True G218992
TU248367 lncRNA upstream 54782 3051880 ~ 3052784 (+) True G218989
TU248366 lncRNA upstream 56682 3050682 ~ 3050884 (+) True G218988
TU248365 lncRNA upstream 57121 3050219 ~ 3050445 (+) True G218987
TU248400 lncRNA downstream 13967 3123697 ~ 3123940 (+) True G219019
TU248345 lncRNA downstream 53005 3162735 ~ 3163345 (+) True G218967
TU248414 lncRNA downstream 86959 3196689 ~ 3196900 (+) True G219028
TU248415 lncRNA downstream 87255 3196985 ~ 3197298 (+) True G219029
TU248426 lncRNA downstream 110443 3220173 ~ 3223781 (+) False G219040
CI01000051_03038457_03041581.mRNA mRNA upstream 64833 3036852 ~ 3042733 (+) True CI01000051_03038457_03041581
CI01000051_03022303_03035625.mRNA mRNA upstream 71711 3021494 ~ 3035855 (+) True CI01000051_03022303_03035625
CI01000051_03014282_03014572.mRNA mRNA upstream 92805 3013677 ~ 3014761 (+) True CI01000051_03014282_03014572
CI01000051_02332216_02342649.mRNA mRNA upstream 764353 2332216 ~ 2343213 (+) False CI01000051_02332216_02342649
CI01000051_02285060_02291993.mRNA mRNA upstream 815293 2284139 ~ 2292273 (+) True CI01000051_02285060_02291993
CI01000051_03128080_03133290.mRNA mRNA downstream 18350 3128080 ~ 3133321 (+) True CI01000051_03128080_03133290
CI01000051_03147600_03152676.mRNA mRNA downstream 37504 3147234 ~ 3153094 (+) True CI01000051_03147600_03152676
CI01000051_03431193_03432454.mRNA mRNA downstream 320561 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03435613_03439371.mRNA mRNA downstream 325883 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
CI01000051_03443548_03451188.mRNA mRNA downstream 333818 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
TU247407 other upstream 1041483 2060534 ~ 2066083 (+) False G218104
TU247404 other upstream 1041877 2059987 ~ 2065689 (+) False G218104
TU248359 other downstream 135713 3245443 ~ 3246873 (+) True G218981
TU249085 other downstream 1264680 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1805244 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1835228 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1849699 4959429 ~ 5049810 (+) False G219803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034267 True 752 mRNA 0.46 8 NC_007131.7 14941264 ~ 14949443 (+)