Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU248394 |
| length | 923 |
| lncRNA type | antisense_over |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G219015 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 3096824 ~ 3097789 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU248370 | lncRNA | upstream | 23528 | 3071293 ~ 3073296 (+) | True | G218992 |
| TU248367 | lncRNA | upstream | 44040 | 3051880 ~ 3052784 (+) | True | G218989 |
| TU248366 | lncRNA | upstream | 45940 | 3050682 ~ 3050884 (+) | True | G218988 |
| TU248365 | lncRNA | upstream | 46379 | 3050219 ~ 3050445 (+) | True | G218987 |
| TU248364 | lncRNA | upstream | 47420 | 3048636 ~ 3049404 (+) | True | G218986 |
| TU248400 | lncRNA | downstream | 25908 | 3123697 ~ 3123940 (+) | True | G219019 |
| TU248345 | lncRNA | downstream | 64946 | 3162735 ~ 3163345 (+) | True | G218967 |
| TU248414 | lncRNA | downstream | 98900 | 3196689 ~ 3196900 (+) | True | G219028 |
| TU248415 | lncRNA | downstream | 99196 | 3196985 ~ 3197298 (+) | True | G219029 |
| TU248426 | lncRNA | downstream | 122384 | 3220173 ~ 3223781 (+) | False | G219040 |
| CI01000051_03038457_03041581.mRNA | mRNA | upstream | 54091 | 3036852 ~ 3042733 (+) | True | CI01000051_03038457_03041581 |
| CI01000051_03022303_03035625.mRNA | mRNA | upstream | 60969 | 3021494 ~ 3035855 (+) | True | CI01000051_03022303_03035625 |
| CI01000051_03014282_03014572.mRNA | mRNA | upstream | 82063 | 3013677 ~ 3014761 (+) | True | CI01000051_03014282_03014572 |
| CI01000051_02332216_02342649.mRNA | mRNA | upstream | 753611 | 2332216 ~ 2343213 (+) | False | CI01000051_02332216_02342649 |
| CI01000051_02285060_02291993.mRNA | mRNA | upstream | 804551 | 2284139 ~ 2292273 (+) | True | CI01000051_02285060_02291993 |
| CI01000051_03107566_03109607.mRNA | mRNA | downstream | 9777 | 3107566 ~ 3109730 (+) | True | CI01000051_03107566_03109607 |
| CI01000051_03128080_03133290.mRNA | mRNA | downstream | 30291 | 3128080 ~ 3133321 (+) | True | CI01000051_03128080_03133290 |
| CI01000051_03147600_03152676.mRNA | mRNA | downstream | 49445 | 3147234 ~ 3153094 (+) | True | CI01000051_03147600_03152676 |
| CI01000051_03431193_03432454.mRNA | mRNA | downstream | 332502 | 3430291 ~ 3432788 (+) | True | CI01000051_03431193_03432454 |
| CI01000051_03435613_03439371.mRNA | mRNA | downstream | 337824 | 3435613 ~ 3439851 (+) | True | CI01000051_03435613_03439371 |
| TU247407 | other | upstream | 1030741 | 2060534 ~ 2066083 (+) | False | G218104 |
| TU247404 | other | upstream | 1031135 | 2059987 ~ 2065689 (+) | False | G218104 |
| TU248359 | other | downstream | 147654 | 3245443 ~ 3246873 (+) | True | G218981 |
| TU249085 | other | downstream | 1276621 | 4374410 ~ 4375330 (+) | True | CI01000051_04374052_04393328 |
| TU249308 | other | downstream | 1817185 | 4914974 ~ 5049810 (+) | False | G219803 |
| TU249297 | other | downstream | 1847169 | 4944958 ~ 5049810 (+) | False | G219803 |
| TU249302 | other | downstream | 1861640 | 4959429 ~ 5049810 (+) | False | G219803 |
