RNA id: TU248364


Basic Information

Item Value
RNA id TU248364
length 316
lncRNA type intronic
GC content 0.34
exon number 2
gene id G218986
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3048636 ~ 3049404 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAGTTGAACTTCTTAATTATTGCCCTGATAGTGGAAATGGGGATTTTCAATGCTTCAGCTATTTTCTTACAGCCACTTTCTATTTTGTGAAGCTCAACAATCTTTTGCTGCACATCAGAACTATATTCTTTGGTTTTATTCATTGTGTTGAATGATTAAGGGAATTTGGCCTTTGTGTTTCCTCATGTTTATACTCCTGTGGAACAGGAAGTCATGGCTGGACAATTTCATATTCATGATCACCCTGGTGTGCCAAAAAAAATTTAAATATGAATGGGAATATACTTCAGAGATATTTTACTCATAAAAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248362 lncRNA upstream 3558 3044796 ~ 3045078 (+) True G218984
TU248246 lncRNA upstream 7718 3039603 ~ 3040918 (+) True G218891
TU248305 lncRNA upstream 74568 2973148 ~ 2974068 (+) True G218930
TU248298 lncRNA upstream 86109 2962196 ~ 2962527 (+) True G218927
TU248296 lncRNA upstream 87151 2959355 ~ 2961485 (+) True G218926
TU248365 lncRNA downstream 815 3050219 ~ 3050445 (+) True G218987
TU248366 lncRNA downstream 1278 3050682 ~ 3050884 (+) True G218988
TU248367 lncRNA downstream 2476 3051880 ~ 3052784 (+) True G218989
TU248370 lncRNA downstream 21889 3071293 ~ 3073296 (+) True G218992
TU248394 lncRNA downstream 47420 3096824 ~ 3097789 (+) True G219015
CI01000051_03038457_03041581.mRNA mRNA upstream 5903 3036852 ~ 3042733 (+) True CI01000051_03038457_03041581
CI01000051_03022303_03035625.mRNA mRNA upstream 12781 3021494 ~ 3035855 (+) True CI01000051_03022303_03035625
CI01000051_03014282_03014572.mRNA mRNA upstream 33875 3013677 ~ 3014761 (+) True CI01000051_03014282_03014572
CI01000051_02332216_02342649.mRNA mRNA upstream 705423 2332216 ~ 2343213 (+) False CI01000051_02332216_02342649
CI01000051_02285060_02291993.mRNA mRNA upstream 756363 2284139 ~ 2292273 (+) True CI01000051_02285060_02291993
CI01000051_03107566_03109607.mRNA mRNA downstream 58162 3107566 ~ 3109730 (+) True CI01000051_03107566_03109607
CI01000051_03128080_03133290.mRNA mRNA downstream 78676 3128080 ~ 3133321 (+) True CI01000051_03128080_03133290
CI01000051_03147600_03152676.mRNA mRNA downstream 97830 3147234 ~ 3153094 (+) True CI01000051_03147600_03152676
CI01000051_03431193_03432454.mRNA mRNA downstream 380887 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03435613_03439371.mRNA mRNA downstream 386209 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
TU247407 other upstream 982553 2060534 ~ 2066083 (+) False G218104
TU247404 other upstream 982947 2059987 ~ 2065689 (+) False G218104
TU248359 other downstream 196039 3245443 ~ 3246873 (+) True G218981
TU249085 other downstream 1325006 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1865570 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1895554 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1910025 4959429 ~ 5049810 (+) False G219803

Expression Profile