RNA id: CI01000051_03147600_03152676.mRNA


Basic Information

Item Value
RNA id CI01000051_03147600_03152676.mRNA
length 2206
RNA type mRNA
GC content 0.47
exon number 4
gene id CI01000051_03147600_03152676
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3147234 ~ 3153094 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAATAAGTCCCAGTGTAATGTGCCCCGGACTCAGACAAACTGCCTCCAAACCTGAAGAGACAAACTGAGGGATCGCAGACATCAACCACCAATCAAAACCAGACACTCTGACCAGCCCTTCAAAGGCAACCTTTTGCACAACCGAGAGGAAAAGATTGAAAAGACTCAGGTGAGAGGTCATTAGTGGAACGCCAGAGAAGTGAGCAGCTCCGGTTACGCATGTGAGGTGAAAGGGAAAGAACAGATTAGTGCCGGAGCTAAAGAGGACAGGGCAGACAAGTGATCCGCAGAAAGAGTAGAGTCACCTCTGCGTAAACCTTCCTGAAAGAAGAGTAAAGAAGTTTCCAGGTATCCACCTCAACATGTGGTTTTTGGCTGTGTTGTGTGTTTCCTGCCTGCTCATGGGCACCCAGGCTCAGAGCAGTGCTAGTTTTCGTCGGGCGAATGCCGGCAATGGCCGTTGCCAGTACAGCTTCACGGTGGACAGCCCTACAGAGGCCAGTTGTCCATCACCAGGTTCAAGTCCTGAGATGGAGGCCCTGAAGTCCCGTCTGGGGCTGCTAGAGGCGCTGGTCGCCCGTCTCGTAGGAGGGGAAGCCGTGTCAGAGTCATCACATAGCTCTGGATCTCAGTCAGTCCTCCAGGACTCTTACAACCAGGTGATGGGGGAGAACGCTCAGCTCCAGAGAGAGAAGCAAAGACTGGACAGACAGGTTCAGGACCTGCAGCAGAGGATGGAAGAGCTCCGCCAGGAGGCTGAGAGGTTGAGGAGCAGACCCTGCGTGCCTCCTAGAGTGCCGCAAAATGACAACAGCTTCAGACCAGGATCAGGTTCTGCACTTTCCCACCTGGTATCCACCCCTGGGAATACACAAAGAGACACAAGCAGTTTAAGAGATCCTGCATGGCAATTCTCAAATCCAGGATATCAAGAGCTGACAGCTGTGGTCACTGAGGTGTCTGCCCCAAATCTGGAAGGTCCAACGGACATCTCAGGCTGTGGTGACCTGGTGTGGGTAGAAGATCCTGAAGTGCACCGTAAGGCTGACAGTATTGCAGGTAAATATGGTGTCTGGATGCAAGACCCAGAAGCTAAGGAACCTTATGGTCCAGAGATGGTATGGCGCATCGATGCCGTGGGGTCTGACATCCGTCAACTATTCGGGTATGAAAACATGGACCAGCTGTCTCGTGGGTTTCCTACCAAAGTCCTCCTCTTGCCAGAATCCGTGGAGAGCACAGGAGCCACCATGTACAAAGGCTCCTTGTACTACCAACGGAGGCTCAGCCGCACACTTATACGATATGATCTACTCTCCGAGAGCATTGCTGCCCGCCGTGATCTTCCCCATGCTGGCTTCCATGGTCAATTCCCCTACTCCTGGGGTGGTTACACAGACATTGACCTTTCAGTAGATGAGAATGGTCTATGGGCCATATACAGCACCAACAAAGCCAAGGGCGCTATTGTGATCTCCCAGCTGGACCCTCACAACTTGGAGGTGAAGGGCACCTGGGAGACTAAAATCCGCAAGACTTCCGTAGCTAATGCTTTTATGATCTGTGGCAAGCTGTACACGGTTGCTAGTTACACCTCACCAAACACCACCGTAAATTACATGTATGACACTGCAACCAGCCAGGGTAAAACAATCTCAGTGCCGTTCAAAAACCGCTATCGCTACAACAGCATGGTAGACTACAACCCAGGACAGAGAAAGCTATATGCTTGGGATAACTATTACATTGTGTCTTATAAAGTGAGACTAGGCAAGCAGGAGTAAAGTGAAGCCATCAACGTAAATTTCCATATCACCCCAGCTTATAGACGCATTTTGCAATATTTTAATATTTTAACATCCAGTGGGACACCTATTGTTGGATTTACTGACAATGATAGACAATCTAGAGTGAAAAGGCAACTGGACAAGATTCAACCATAATTATGCTGGTCACATTAATAATAGCACCAATAGTACGTATATATAATGAAAACAGAAAATAACATTTTCCTGATAATATAATTTTATATAAGCTGTTTTTTTTTTCCAAGAAAACAGCTAAAGAAATTAATTATACCAGTGACTACACTGCACATCTTCACATTAAGTGGACTTATCTTAAAAAGATGTTCCTTTGACCAACAAGTTCCCAAATGGATAAAGTATCTAATCATGTATCATGATAAAAAATGTATCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248400 lncRNA upstream 23294 3123697 ~ 3123940 (+) True G219019
TU248394 lncRNA upstream 49445 3096824 ~ 3097789 (+) True G219015
TU248370 lncRNA upstream 73938 3071293 ~ 3073296 (+) True G218992
TU248367 lncRNA upstream 94450 3051880 ~ 3052784 (+) True G218989
TU248366 lncRNA upstream 96350 3050682 ~ 3050884 (+) True G218988
TU248345 lncRNA downstream 9641 3162735 ~ 3163345 (+) True G218967
TU248414 lncRNA downstream 43595 3196689 ~ 3196900 (+) True G219028
TU248415 lncRNA downstream 43891 3196985 ~ 3197298 (+) True G219029
TU248426 lncRNA downstream 67079 3220173 ~ 3223781 (+) False G219040
TU248427 lncRNA downstream 67079 3220173 ~ 3221851 (+) False G219040
CI01000051_03128080_03133290.mRNA mRNA upstream 13913 3128080 ~ 3133321 (+) True CI01000051_03128080_03133290
CI01000051_03107566_03109607.mRNA mRNA upstream 37504 3107566 ~ 3109730 (+) True CI01000051_03107566_03109607
CI01000051_03038457_03041581.mRNA mRNA upstream 104501 3036852 ~ 3042733 (+) True CI01000051_03038457_03041581
CI01000051_03022303_03035625.mRNA mRNA upstream 111379 3021494 ~ 3035855 (+) True CI01000051_03022303_03035625
CI01000051_03014282_03014572.mRNA mRNA upstream 132473 3013677 ~ 3014761 (+) True CI01000051_03014282_03014572
CI01000051_03431193_03432454.mRNA mRNA downstream 277197 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03435613_03439371.mRNA mRNA downstream 282519 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
CI01000051_03443548_03451188.mRNA mRNA downstream 290454 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_03457204_03459579.mRNA mRNA downstream 303865 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03679568_03682342.mRNA mRNA downstream 526343 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
TU247407 other upstream 1081151 2060534 ~ 2066083 (+) False G218104
TU247404 other upstream 1081545 2059987 ~ 2065689 (+) False G218104
TU248359 other downstream 92349 3245443 ~ 3246873 (+) True G218981
TU249085 other downstream 1221316 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1761880 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1791864 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1806335 4959429 ~ 5049810 (+) False G219803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034275 True 2495 mRNA 0.44 4 NC_007131.7 15015557 ~ 15021628 (+)