RNA id: CI01000051_07507549_07530087.mRNA


Basic Information

Item Value
RNA id CI01000051_07507549_07530087.mRNA
length 1065
RNA type mRNA
GC content 0.51
exon number 8
gene id CI01000051_07507549_07530087
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7507549 ~ 7530087 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCAGCCACTATTCAGCATGAAGGCTCACGTCTTCCAAATTGACCCAGACACTAAACGAAATTGGATTCCAGCCAGCAAACACGCCGTCACAGTCTCCTTCTTCTATGATGCTGGCAGGAGCGTGTATCGCATCATCAGCGTTGGGGGCACTAAGGCGATTATCAACAGCACCATCACACCTAATATGACTTTCACCAAAACGTCACAGAAGTTTGGCCAGTGGGCGGACAGCAGGGCGAACACAGTGTATGGCCTTGGGTTTGCCACAGAGCAGCAGCTTCAGCAGTTCTCAGAGCAGTTTAAAGAGCTTAAGGAGGCTGCACGGCTCGTCCGGGATAAATCACAGGAGAAGTTTGAGCTGCTGAGTCCTGGCCTAAACATCTCTGCTCCACAGGCACTGTCGGTGGACCGTCAGTCTCCTCCACTGCTTGGTGTCAATGGCTCTAGTGAGGACAAGTTGTTTCGCAGCAAGAGTGCTGATATGGAGCAGTCCATGGAAAAAGAACAGATGAGGAAGATGCTTTCCGAAGGGTCGATATGTGAGAGAAACTCTGAAGCGGAGCTGTTTTCTCTTCGGGACAGCAACGCTAAGCTTGTGGCTGCTCTGCATGAAGCTAACAGCAGCATTGAACATTGGAAAAAACAATTAGCCGAGTATCAGGAAGAAACAGATCACCTCCGAGAACAGGTTGCAGAGCTGGAGGCTCAGAGCAGGGTTTCTGCTTCCAGTGAGATGGGGAGCGAGGAGCTCACACAGTCTATGGCCGAGATGGAGGCTCTTATAAAAGCTAAAGATGAGGAAATAAAGACTCTGCGGGGCAAGAAGCCAGATTTTAGTGAGCTGGAGAAAGAAAGGGAAGAAGCCAGTCAAAGGATGCAGGACCTGGAAGTGAAGAACTCCGAGTTGGAGAAACGAGTGCAAACAGCAGAAAGCGCTTTAGCTTCCTCCCAGGATGCCCAGAACAGGGCGGAGAATGCGGTGCAGAAGGTCATCGAAACTTTAGACGTCAAGATCTACGACTTGAGTGACCTGCGACAAAACCTAGCCAAGCTCCTGGAGAAA

Function

GO:

id name namespace
GO:0035256 G protein-coupled glutamate receptor binding molecular_function

KEGG:

id description
K15010 HOMER; homer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251136 lncRNA upstream 52012 7455331 ~ 7455537 (+) True G221409
TU251135 lncRNA upstream 55538 7451740 ~ 7452011 (+) True G221408
TU251128 lncRNA upstream 56659 7450479 ~ 7450890 (+) False G221406
TU251053 lncRNA downstream 274264 7804351 ~ 7840774 (+) True G221333
TU251035 lncRNA downstream 289610 7866916 ~ 7867028 (+) True G221315
TU251268 lncRNA downstream 465935 7996022 ~ 7996297 (+) True G221530
TU251276 lncRNA downstream 478828 8008915 ~ 8009351 (+) True G221538
TU251277 lncRNA downstream 486157 8016244 ~ 8016535 (+) True G221539
CI01000051_07470914_07489207.mRNA mRNA upstream 18307 7470914 ~ 7489242 (+) True CI01000051_07470914_07489207
CI01000051_07391277_07399712.mRNA mRNA upstream 107763 7390634 ~ 7399786 (+) True CI01000051_07391277_07399712
CI01000051_07378590_07389158.mRNA mRNA upstream 117979 7378590 ~ 7389570 (+) True CI01000051_07378590_07389158
CI01000051_07367270_07370738.mRNA mRNA upstream 136671 7366852 ~ 7370878 (+) True CI01000051_07367270_07370738
CI01000051_07345863_07353841.mRNA mRNA upstream 152429 7345863 ~ 7355120 (+) True CI01000051_07345863_07353841
CI01000051_07534938_07540104.mRNA mRNA downstream 2552 7532639 ~ 7540418 (+) True CI01000051_07534938_07540104
CI01000051_07542167_07549737.mRNA mRNA downstream 12080 7542167 ~ 7550660 (+) True CI01000051_07542167_07549737
CI01000051_07611022_07612093.mRNA mRNA downstream 80362 7610449 ~ 7612093 (+) True CI01000051_07611022_07612093
CI01000051_07634084_07726089.mRNA mRNA downstream 103792 7633879 ~ 7726109 (+) True CI01000051_07634084_07726089
CI01000051_07806350_07831779.mRNA mRNA downstream 276263 7806350 ~ 7832334 (+) False CI01000051_07806350_07831779
TU251108 other upstream 94542 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 165003 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 674481 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 2455516 5018305 ~ 5052033 (+) False G219803
TU251044 other downstream 575556 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 812855 8342942 ~ 8343448 (+) True G222727

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006530 False 4506 mRNA 0.37 9 NC_007122.7 13423776 ~ 13505942 (+)