RNA id: CI01000051_07534938_07540104.mRNA


Basic Information

Item Value
RNA id CI01000051_07534938_07540104.mRNA
length 3975
RNA type mRNA
GC content 0.40
exon number 8
gene id CI01000051_07534938_07540104
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7532639 ~ 7540418 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAATGTGCCTGATTGCAGTTGACCCAATACTGCCACCTACTGAAGATTAAAAGTTCTCAATCATGCTCTAAATACTTAAAGGATTAGTCCACTTTCAAATAAAAATTTCCTGATAATTTACTCACCCCCATGTCATCCAAGATGTCCATGTCCTTCTTTCTTCAGTCCAAAAGAAATTAAGATTTTTTATGAAAACATTCGAGGATTTTTCTCCTTATAGTGGACTTCACTGGTCTCCAAACAGTTGAAGGTCAAAATTACAGTTTTAGTGCAGCTTCAAAGGGCTTTAAACGATCCCAGACGAGGAATAAGGGTCTTATCTAGCTAAACGATTGGTCATTTTCTATAAAAAAAAAAAAAAAAAAAAAAATGTATATGCTCTATAGGCACAAATGATAGCATCACAAGTGCTTCCACCAGAACGCGATTCCGTATTGTTCAAAAAGCTTACGCTAAATGTCCTACGCCTTCCCTCACAGACATTATAATAAACACCTTCCCTATTCAACTTACGGAACAAACGCGGCGCCAGTTCCGTTTTTTCCGTAAGTTGAATAGGGAAGGCGTAGGACATTTAGTGTAAGCTTTTTAAAGAATACGGAATCGCGTTCTGTTGGAAGCACTTGTGATGCGATCATTTGTGCCTATAAAGATATATTTTTATTTTTTTTATTTTTTTTTTTTATTTAGAAAATGACCGATCGTTTCGCTAGATAAGACCCTTATTCCTCATCTGGTATTGTTTTGCCCTTTGAAGCTGCACTAAAACTGTAATTTTGACCTTCAACCGTTTGGAGACCTTTGAAGTCCAAATAAGGAGAAAAATCCTGGAATGTTTTCATTAAAAACCTTAATTTCTTTTCGACTGGAGAAAGAAGGACATGGACATCTTGGATGACATGGGGGTGAGTATATTATCAGGAATTTTTTTATTTGAAAGTGAACTATTCCTTTAATATCAAAAAAGATGTGGAGGGTTCAGTAAGCGTCCTAAAATGTGTTAAACCACTTTGACATCTCCAAATAACTTGAGTGAGCAACATAGAGACCCGCTACAATGGTTGTCTTGGAAAACATTTAATAATTAATGTCTCCACAACAAATTGAAAAGTCCCTGACCCCCCTTTGCCTTTGTGTTTGGACAAGAACGTAGCAAGAATACAAGGTAAAATAATTGTATGATTTTATGTATAAAATACGTATGTATATATTACATAACTCAATGTAAAATAATATATCTTATACATCTATTAATTTGAACGATATTGGAGGGAATTATGGAGAGGCGCATTTCACCAGCATCATTATGACCAAAAAAAAGAATTGTGACATCATAGATGCTTCGATGCAGGAGAGAGATTTGGTGAGTGAGCTGCTTTAACCCTTTGAGCGGTACGGTCCCACATATGGGATTTTTATTTCTGTGCCTCTGGGCATACGGTCCCACATATGGGATTTAGAACGTTCAGCGACGTCACATAACTGCCAGAATCAAACTGTGCTTTCGCGCTTTGGCTGCGAGACGGAAGCGCTCAGCTCTTGTCATGTATCACAGCTATGCAGTGTTTTCAGCCACATAATGTTTTTTTTTTTTTTTTTTAAGGTTTCAGACATTTAAATACGCATAAGCACCAGTAAAACAATACATTTAGAATTTATAAAATACACACTGATGTCAGACATCAGTGGAAGCAGCAATAACAATCCATTCAAATATAATTTGCCGACATTTATTCATGTCAGACACACATAATGGGCCTAAGTAACTATAAAGTTTACTCTATTATTCTTCCAGTTCACCAGCCACTTACTTGCATGTACTTTGGGAGAAACTGATGAATTCACGTGCTGTAAATCCGACTGACAGGACTCTGCGAACTGCAGCGCAAACTAAGATGGCGGCGCCCATCTCGCATTATAGATCAAGATAAAGATCATTTATAAAGGTTTTAAAAAGACAAAACAAACTCACTTACACATATTTGAGAATCGGAATATCAGATAGTTGATGACATTGTAAGCAAGTCTGTGAATACTTTAAATAAAAAAGGATAAACAAAATAGCGATTCATCCGTCATACAGTGTTATTGTGGCTGCGTTCAGCGCACGTGACACGCATGACGCGTCGCCATGGAAACAGTAAGGGCAAACGTTCTAAAATAACGGTCGCCTTAAAAAAACTCACTCTGGGGGGTCAGTTAATATTTTAAACTTCACGCTCAATAGATTTCAATCGTACATTTTTGCTTTTTAAAATATCCAAAAACGTTCTAGGTGTACTTGCTCGTGACGCTATGAAGATGATTCAGTCGAGGATTTCAAATGTACCATTTTTGGATGGAGCAAACGACATGTATATAACAACTAACAAGAGCAACTTTAAATTAGCGGACAACATCGCCATGCAGAAAAGAGATATTATCCGTCAGCCTGTCTCAGAACATTTACAGCGTGAAGACCACAATGACCTGGGAATGTACCAGACAGAGACAGCGCTGTCCTTCCCATCCCATTCACCAGTACATGTCATCCAGCAAGTGTTAACCCACCTCACGATGCAAAGCACCAACATTAAAATGCATTCTGGGAACAGCTGTGGAGACTTTGAGACCACTCAATCAGACTTCAAGACCCTGCCGATGTCTGCAGCCCAACTAATTCGTCCCACCACTGCAGTCAGGATAGCTCTGCCGGGGAGCAAATGTCCTGAAAGTACGTACAGATCCAGTTACACCGAACATGAAGTGTCCCCAGTCCTCAGGGCACAGGAAACGCTGAACACAGGTGTCGGTTCAAGTCTGAACGAGGACAAAAGGGACCAATTCAGCTCCAGTTATCGTAAGCAGTTCAAGTACAGATGGTGTCCTACTCCTTCTCCTTCTGAGTCCTCGAAGAAGCAACGAATCCAGTATTCATCTGTAGCAATGGGAGACCGAGAAAAGATACTGAACAAACAAACAACATACTCCACCTCTTTCAGTGAATCAGGTGCCCACAGCTTTGCTAAATTCAGGGAATATCTGCTTCCCAAGATAAATAAATCTCGGCCCTTCAACCTTCGGGAACTTGCTGATGAAAAATGGATAACAACCTCATCTGAGGAATTTCGTGCACATAAATGTGGCCCTATTCACCTAGAGCGCAGAAGTCCGACCCTCAGCTTTGTGTTCAAAGGAGAGATGCTTAAAGGCAACCAAGAAAGACTGTCAACAACAAACCAGAGCTTCTTCCCAAAGATAGACCGCGCGCAGTTCCCAGTGCATGTGAATGGTGCCAGTATCAGGACTTTGAGCAATGTAAAATTCGGGTGGCCTGATCTGGCTGGAAGATTCTACAGCACAACATCACAGGAGCAGTTCCCATCAAAAGAGGTGGTCCGTCCCAAGCCACCCATCTACCCACCTAGCTATGTGCTGCTTGAGCAAGCACCAGATCGGATGCTTACAACTGTGCAAAAAGATTTTGTCCCCTTGAACTCTAGAAGACAGGAATTGAGCCCTAGCCAGCTTCAGCAGGTTAAAGACAGTCATATCAGGCCCCAGCACAGCAAACATGACTTCAGGACAACCCACAATGAAGCTTTTGTGCCCAAGCCCTGTTGCAAGGCATCCCTGGACAACCCACCCCTACAACACATCAGCCATATGCCGTTTTAAGTCGAAAAACATATAAATTAGAAAAAAAGGTCTCGTTCTAAACAAATGTTTAACGGTTTTAGCACAGGAAAATTAGCTGAAATCCTTCCTCAGCCTATATGCCAGTCTGTGAGTATTATCAGGTGTTTGACCTTAAACACAATCCACAAAATCCAGCTCAACTCCATCATACAATAAGAGCAAATAGAAACAAATACTATTTGTTATTATTTATTGATGAACTTGATTTTGTTGAAATATGTTTTTGATCGCAGACTACCATACAGGGATATTTGTTTAGAGTGCAGATCTTTTTTTGCTTTTGACTTTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251136 lncRNA upstream 77102 7455331 ~ 7455537 (+) True G221409
TU251135 lncRNA upstream 80628 7451740 ~ 7452011 (+) True G221408
TU251128 lncRNA upstream 81749 7450479 ~ 7450890 (+) False G221406
TU251053 lncRNA downstream 263933 7804351 ~ 7840774 (+) True G221333
TU251035 lncRNA downstream 279279 7866916 ~ 7867028 (+) True G221315
TU251268 lncRNA downstream 455604 7996022 ~ 7996297 (+) True G221530
TU251276 lncRNA downstream 468497 8008915 ~ 8009351 (+) True G221538
TU251277 lncRNA downstream 475826 8016244 ~ 8016535 (+) True G221539
CI01000051_07507549_07530087.mRNA mRNA upstream 2552 7507549 ~ 7530087 (+) True CI01000051_07507549_07530087
CI01000051_07470914_07489207.mRNA mRNA upstream 43397 7470914 ~ 7489242 (+) True CI01000051_07470914_07489207
CI01000051_07391277_07399712.mRNA mRNA upstream 132853 7390634 ~ 7399786 (+) True CI01000051_07391277_07399712
CI01000051_07378590_07389158.mRNA mRNA upstream 143069 7378590 ~ 7389570 (+) True CI01000051_07378590_07389158
CI01000051_07367270_07370738.mRNA mRNA upstream 161761 7366852 ~ 7370878 (+) True CI01000051_07367270_07370738
CI01000051_07542167_07549737.mRNA mRNA downstream 1749 7542167 ~ 7550660 (+) True CI01000051_07542167_07549737
CI01000051_07611022_07612093.mRNA mRNA downstream 70031 7610449 ~ 7612093 (+) True CI01000051_07611022_07612093
CI01000051_07634084_07726089.mRNA mRNA downstream 93461 7633879 ~ 7726109 (+) True CI01000051_07634084_07726089
CI01000051_07806350_07831779.mRNA mRNA downstream 265932 7806350 ~ 7832334 (+) False CI01000051_07806350_07831779
CI01000051_07855788_07865402.mRNA mRNA downstream 314822 7855240 ~ 7865625 (+) True CI01000051_07855788_07865402
TU251108 other upstream 119632 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 190093 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 699571 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 2480606 5018305 ~ 5052033 (+) False G219803
TU251044 other downstream 565225 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 802524 8342942 ~ 8343448 (+) True G222727

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006533 True 2006 mRNA 0.40 8 NC_007122.7 13507122 ~ 13517846 (+)