RNA id: TU247257


Basic Information

Item Value
RNA id TU247257
length 1720
lncRNA type antisense_over
GC content 0.50
exon number 12
gene id G217968
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1993373 ~ 2003164 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTTTTTATTTATTTATAAAATATATAAAAAAAGTGTTTTCTCATAATTTAGTTGTACTTGTATTTTGCAAATGTTTTATTTTATTTCAAAATATTTTTTTGGTCTTTTTTACATTTTCATTATAATTTTGGTGTGGGTCAAAAAATCATTGTGTTCTTACCCTCCAATCTCAGAGACGTGAGGTCTGTGTGCAGCACTATCAAGGCCAGAGTGTTGTGGAGATGCAGGAACTCTCGAGCCTGTGCTGAACTCCAGCGTCGGTGCTGGTTGTTTTGCCGGTTGGCTCCCAGGAGGAAGACAAGCATCCGACGATAAGCTGAATGTTTTAGCAGCAGCTGACACGGCCCACAGCCCCTCTGAGCAAAGTTACTGAAGAGGCTGAAGTACTGAGAACAGTTCTTGCAGTTGTCCGGGACGTCCTTATCCAACAGAGAAAGCAGCATGTCTAAAAGACAGTCCAGCCCAATGTCATGGAAGTGCAAAGCACTCTCCAGGGTCTTCTCCAGGATGGTGGCCACCACGACACGGACCTCCCGAACACTGCATTCCAACAGACAGATCTTGATGATCTCCCGTCCTTCAGGTGCCACTAGGTACTGGACCATCCACTGACATGCCTCGCTACTCTTGGACAACAAAACCTCCACGGTAGCAATCCACTCCTCTGTGTCCACCCTGAGTTTCTTTTTGGTGCGCAGGTACGTGTGGAAGAGGAACTGAACAGCCAGCTGCAGGCTAGTTTTTGCCATGGCCTGATAAGACGGATGTTTTAACTTTGTCGCATTGACAGAGGCCAGAGACAGTGTGAAGCTGAAGTAATCGCCGTTGTAAACATCTCTGTTCTTCATAAACTTCAGATTTTCATCTCTCACCATCTGAAAGATCCTGGCGGGCATCTTCTCCACAAACAGACCCTTCTTCTCTCCTTTCTTGACCAAGCGTGTGAGCAGGCTGAGGCGGTCGTTGTTGGCTCTGGGAGGCCTTGGGGAGGATTGGGGTGAGATCTCCGGAGAGGACGGGGCTGACAGGGAGAGATCCTCTGCCTCCTGCCTCATGATGCTGACTCGACTCTTTTTGGGCAGGACGGGGGAGTTCTGGTCACTGATGCGCTGGTAGAACAGCATGTAGGCATTCCAGTAGCGCCGCCGCACATCCGGGTAGGGGTTCGACTGGTCGTAAACTTTGGGTCTGTATTCTCCCCCAAAACACTCATACTCCAGAGTCTCATCGTTCATGTCAAACTCTTCCACGACATTGTCGTTAAACTTATACCAGCGTCCTCGTGCACTACCCCGGCGGTCTTTGATGAACGAGTAATAGTGTCCTGCGTGGGCCTGTCCGCTGTGAACCACCACTCCCACCAGTTCGTAGTTCTCAGAGATGGTGACCTTTTTCCGAGGCGACCCCCCGGATCCGGCTTCGCCCCCTCTCCCGTTCTCTCCGTGATCTGCGCTTGAATCCTGACGGGCCATTCCTGACACCGTGTACGGCTCCATGTTCAGCACCCAAGGGAATCTGATCTGCTCGTCGTATTTGATGGACCGGCCGCTTTCCCAGTCGAAGCCGAATCGCATGAGGTGGATGACCAGCACGCTGGGCAGAGACTTTATACAGGTGCGCTTCACAGTGGTTCGCTTCTCTTTACATTTCTCGCAATAATAAGCATTGCTGCCATCCAGGACCTCTCCTCTGACGAACTGATCAAGAGAGATCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247255 lncRNA upstream 30730 1961104 ~ 1962643 (+) True G217966
TU247389 lncRNA upstream 48271 1944870 ~ 1945102 (+) True G218090
TU247369 lncRNA upstream 109003 1884045 ~ 1884370 (+) True G218070
TU247336 lncRNA upstream 191822 1801292 ~ 1801551 (+) True G218045
TU247335 lncRNA upstream 192265 1800877 ~ 1801108 (+) True G218044
TU247402 lncRNA downstream 18831 2021995 ~ 2022494 (+) True G218103
TU247425 lncRNA downstream 49390 2052554 ~ 2053150 (+) True G218118
TU247436 lncRNA downstream 72252 2075416 ~ 2075640 (+) True G218129
TU247464 lncRNA downstream 118116 2121280 ~ 2121584 (+) True G218149
TU247466 lncRNA downstream 118758 2121922 ~ 2179525 (+) True G218150
CI01000051_01976321_01985259.mRNA mRNA upstream 7214 1976080 ~ 1986159 (+) True CI01000051_01976321_01985259
CI01000051_01965924_01969562.mRNA mRNA upstream 23771 1965703 ~ 1969602 (+) True CI01000051_01965924_01969562
CI01000051_01945810_01948306.mRNA mRNA upstream 44887 1945810 ~ 1948486 (+) True CI01000051_01945810_01948306
CI01000051_01765268_01780393.mRNA mRNA upstream 210959 1765035 ~ 1782414 (+) True CI01000051_01765268_01780393
CI01000051_01669393_01716229.mRNA mRNA upstream 276105 1669326 ~ 1717268 (+) True CI01000051_01669393_01716229
CI01000051_02060996_02061735.mRNA mRNA downstream 57832 2060996 ~ 2062355 (+) False CI01000051_02060996_02061735
CI01000051_02280290_02283028.mRNA mRNA downstream 277126 2280290 ~ 2283368 (+) True CI01000051_02280290_02283028
CI01000051_02285060_02291993.mRNA mRNA downstream 280975 2284139 ~ 2292273 (+) True CI01000051_02285060_02291993
CI01000051_02332216_02342649.mRNA mRNA downstream 329052 2332216 ~ 2343213 (+) False CI01000051_02332216_02342649
CI01000051_03014282_03014572.mRNA mRNA downstream 1010513 3013677 ~ 3014761 (+) True CI01000051_03014282_03014572
TU246453 other upstream 1268669 720772 ~ 724704 (+) True G217248
TU246451 other upstream 1311255 637590 ~ 682118 (+) False CI01000051_00638200_00720543
TU246252 other upstream 1609245 324465 ~ 384128 (+) False G217075
TU247404 other downstream 56823 2059987 ~ 2065689 (+) False G218104
TU247409 other downstream 56823 2059987 ~ 2065689 (+) True G218104
TU247403 other downstream 57370 2060534 ~ 2065689 (+) False G218104
TU247406 other downstream 57370 2060534 ~ 2065689 (+) False G218104
TU247407 other downstream 57370 2060534 ~ 2066083 (+) False G218104

Expression Profile