RNA id: TU251128


Basic Information

Item Value
RNA id TU251128
length 412
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G221406
representative False

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7450479 ~ 7450890 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGTGAGGGAGGGGATTTTCAGCTTGTCTCTCCTCTTCATCTTTAAGAAACCCGTGAAGCACGATCAGGTGAAAATAAACAGCTTGTTTCAGATCTCACGCGAGACAACACAAAGTCTCCACTGTTTACACATCGTCGTTTAACATCTGCCAAACGACAGCGTGAGGATTTCTGTTGAACTAGTGCAGATACTCCATTAAAATATACAAATTCTCAAGGAACACTTTTAGTTGAAGTGATGTCATGTTTCTAAGCGAAAGTGACTCTGGCAGGAAGAGCGAGTGAGAAATGATTGAGATTGAATGGTGCGGTCACATCTCCCATGTGATGTTCAGAGTCAGAGGAGGTGTGCTTCAAAAACGTGCATCAACACACAGGTGGAAAAAAAACAAACACCAAAAAACCCCGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251056 lncRNA upstream 25060 7422923 ~ 7425419 (+) True G221336
TU251107 lncRNA upstream 37472 7409162 ~ 7413007 (+) False G221386
TU251106 lncRNA upstream 39327 7401175 ~ 7411152 (+) False G221386
TU251115 lncRNA upstream 74274 7375973 ~ 7376205 (+) True G221393
TU251105 lncRNA upstream 76745 7373383 ~ 7373734 (+) True G221385
TU251135 lncRNA downstream 850 7451740 ~ 7452011 (+) True G221408
TU251136 lncRNA downstream 4441 7455331 ~ 7455537 (+) True G221409
TU251053 lncRNA downstream 353461 7804351 ~ 7840774 (+) True G221333
TU251035 lncRNA downstream 368807 7866916 ~ 7867028 (+) True G221315
TU251268 lncRNA downstream 545132 7996022 ~ 7996297 (+) True G221530
CI01000051_07391277_07399712.mRNA mRNA upstream 50693 7390634 ~ 7399786 (+) True CI01000051_07391277_07399712
CI01000051_07378590_07389158.mRNA mRNA upstream 60909 7378590 ~ 7389570 (+) True CI01000051_07378590_07389158
CI01000051_07367270_07370738.mRNA mRNA upstream 79601 7366852 ~ 7370878 (+) True CI01000051_07367270_07370738
CI01000051_07345863_07353841.mRNA mRNA upstream 95359 7345863 ~ 7355120 (+) True CI01000051_07345863_07353841
CI01000051_07337005_07340657.mRNA mRNA upstream 109787 7336853 ~ 7340692 (+) True CI01000051_07337005_07340657
CI01000051_07470914_07489207.mRNA mRNA downstream 20024 7470914 ~ 7489242 (+) True CI01000051_07470914_07489207
CI01000051_07507549_07530087.mRNA mRNA downstream 56659 7507549 ~ 7530087 (+) True CI01000051_07507549_07530087
CI01000051_07534938_07540104.mRNA mRNA downstream 81749 7532639 ~ 7540418 (+) True CI01000051_07534938_07540104
CI01000051_07542167_07549737.mRNA mRNA downstream 91277 7542167 ~ 7550660 (+) True CI01000051_07542167_07549737
CI01000051_07611022_07612093.mRNA mRNA downstream 159559 7610449 ~ 7612093 (+) True CI01000051_07611022_07612093
TU251108 other upstream 37472 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 107933 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 617411 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 2398446 5018305 ~ 5052033 (+) False G219803
TU251044 other downstream 654753 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 892052 8342942 ~ 8343448 (+) True G222727

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU476146 True 407 lncRNA 0.44 1 NC_048569.1 58474846 ~ 58475252 (+)