RNA id: TCONS_00018869


Basic Information

Item Value
RNA id TCONS_00018869
length 392
lncRNA type read_through
GC content 0.36
exon number 2
gene id XLOC_008249
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2856696 ~ 2890101 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAATAGGCTGCCTTCATTAAGTGACAGTAAGAGGGCGTCCCAGAGCCAGTCTTTAAAAGGAGTGTGCATTGATGAAGACAGCGGTGAGGATGAGTTTGATCCATTCAAGGGCTCAAGAAAACAGCGCAGATGAGGACGGACTTCCAGCTGCTTATCTACTTTTTCTTAATGAAAATTTAATAAAACcgatttttctttttccttttagtCTACAAGAATCTTTGCAGCGATTTGAGTAGGTTCAAGGTTCAAATCCCTAAAGTTGCTTTAAAGTCATTGTTGAGTGATGTACATTGAAAACTGATgtcttttaaactatttttttaggATTTATTTGATCATTATTACTGTTCATGTCTGTTTTTAAGTCATAAAAGCGATGAACCTGTCA

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0042138 meiotic DNA double-strand break formation biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0031573 intra-S DNA damage checkpoint biological_process
GO:0007095 mitotic G2 DNA damage checkpoint biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0000723 telomere maintenance biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0097552 mitochondrial double-strand break repair via homologous recombination biological_process
GO:0035861 site of double-strand break cellular_component
GO:0005634 nucleus cellular_component
GO:0030870 Mre11 complex cellular_component
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0000014 single-stranded DNA endodeoxyribonuclease activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004527 exonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018751 lncRNA upstream 20771 2865624 ~ 2865929 (+) True XLOC_008250
TCONS_00018750 lncRNA upstream 31071 2844812 ~ 2855629 (+) True XLOC_008248
TCONS_00018868 lncRNA upstream 70986 2814070 ~ 2815714 (+) True XLOC_008247
TCONS_00016615 lncRNA upstream 463089 2421835 ~ 2423611 (+) True XLOC_008240
TCONS_00018866 lncRNA upstream 1168071 1715361 ~ 1718629 (+) False XLOC_008232
TCONS_00018870 lncRNA downstream 101293 2988791 ~ 2989951 (+) True XLOC_008251
TCONS_00016627 lncRNA downstream 282476 3169974 ~ 3201297 (+) False XLOC_008253
TCONS_00016628 lncRNA downstream 308653 3196151 ~ 3201213 (+) True XLOC_008253
TCONS_00018871 lncRNA downstream 350097 3237595 ~ 3239957 (+) True XLOC_008255
TCONS_00018872 lncRNA downstream 495316 3382814 ~ 3383114 (+) True XLOC_008258
TCONS_00016621 mRNA upstream 308561 2559875 ~ 2578139 (+) True XLOC_008244
TCONS_00016619 mRNA upstream 342866 2520319 ~ 2543834 (+) False XLOC_008243
TCONS_00016620 mRNA upstream 343141 2534740 ~ 2543559 (+) True XLOC_008243
TCONS_00016617 mRNA upstream 378712 2498496 ~ 2507988 (+) False XLOC_008242
TCONS_00016626 mRNA downstream 237638 3125136 ~ 3162586 (+) True XLOC_008252
TCONS_00016629 mRNA downstream 331636 3219134 ~ 3223448 (+) True XLOC_008254
TCONS_00016630 mRNA downstream 358977 3246475 ~ 3251221 (+) True XLOC_008256
TCONS_00016631 mRNA downstream 396918 3284416 ~ 3368645 (+) False XLOC_008257
TCONS_00016632 mRNA downstream 396918 3284416 ~ 3379041 (+) False XLOC_008257
TCONS_00016623 other upstream 200994 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 212110 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 528075 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 1012922 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016599 other upstream 1318358 1560665 ~ 1568342 (+) True XLOC_008228
TCONS_00016634 other downstream 618811 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016665 other downstream 2967613 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 3671552 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 3791023 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 3883088 6770586 ~ 6772120 (+) True XLOC_008302

Expression Profile

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