RNA id: TCONS_00016631


Basic Information

Item Value
RNA id TCONS_00016631
length 1146
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_008257
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3284416 ~ 3379041 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTTAGTACACAGACATTCAACAAGAAGCGACAGCAACAGGACTCTCTCTCCCCCCCACACACATAATACAGGACTGGACATTACAAAACTTCACAACAACACCAGTCTGACGCACGCTGCGACTTCGAAATCGTTCCCAATGTAACTCAAGTCAGTTTAACTAAGTATCCGCAGTTCGCTTGTGTTTACAGTTTCGCGTTTCACCTCATATTTTCGCTTGACAATCATATGTGACATTTTAAGAGGCAGACAGTATTGCTGGTACCATGGCTGACGCAGCCCAAAACCAGATGGTGGAGATCGACCCGGACTTCGAGCCGCTGTCCCGGCCCCGCTCCTGCACTTGGCCGCTGCCGCGACCCGAGTTCCCAAACCCCGCCGCCGCGGACTCCAACACTTCATCCCCGGCTCCGTCCGTCAAACAGGAGCCTTCCAGCACCGCGGACTTCATCAACAACCTCAGTCTGCTAGAGGAGAATGAGGACTACCCGGACCAGAAGCCTCTCATGCTCTGCAGCGAGTTCCAGTGCCAGGAGAACTGCATCCACCAGCAGCAGATCCCGAGTCAGCAGCAACAGGTGCCCGTGCTGTCCTCTCCGGTGGCCGCCGCCGCCGCAGCCGCAGCAGCCGCGCAACGCAAAAGCAGCTCGTCTCGGCGCAACGCCTGGGGAAATATGTCGTACGCGGACCTGATCACCAAAGCCATCGAGAGCTCCCCAGAAAAGCGGCTCACCTTGTCTCAGATATACGACTGGATGGTGAAAAGCGTCCCGTATTTTAAAGACAAGGGGGATAGTAACAGCTCCGCGGGCTGGAAGAACTCAATCAGACACAACCTGTCCCTACATAGTAGGTTCATCCGAGTGCAGAATGAGGGGACTGGTAAGAGCTCTTGGTGGATGCTCAACCCTGAGGGTGGGAAAAGTGGAAAGTCTCCTCGACGCCGGGCGGCCTCCATGGACAACAACAGCAAGTTTGCCAAGAGCAGAGGACGAGCGGCAAAGAAAAAGGTACAAGCTGCTTACCAAACCTTTCAGCAGTCActttggctgcatttacactgcatgcttTAAGTGACTTTGTTCCCATTTTTTTCTCCCATCGGGCACAGATCAGGTATGGCCCATGTACTGTACGtctaagc

Function

GO:

id name namespace
GO:0048745 smooth muscle tissue development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006094 gluconeogenesis biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0008286 insulin receptor signaling pathway biological_process
GO:0042593 glucose homeostasis biological_process
GO:0048659 smooth muscle cell proliferation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001945 lymph vessel development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-59 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within with a positive effect on gluconeogenesis. Acts upstream of or within several processes, including lymph vessel development; smooth muscle cell proliferation; and smooth muscle tissue development. Predicted to be active in nucleus. Is expressed in digestive system; head mesenchyme; pericardial region; and pharyngeal arch. Human ortholog(s) of this gene implicated in alveolar rhabdomyosarcoma. Orthologous to human FOXO1 (forkhead box O1).

Ensembl:

ensembl_id ENSDART00000187665

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018871 lncRNA upstream 44459 3237595 ~ 3239957 (+) True XLOC_008255
TCONS_00016627 lncRNA upstream 83119 3169974 ~ 3201297 (+) False XLOC_008253
TCONS_00016628 lncRNA upstream 83203 3196151 ~ 3201213 (+) True XLOC_008253
TCONS_00018870 lncRNA upstream 294465 2988791 ~ 2989951 (+) True XLOC_008251
TCONS_00018869 lncRNA upstream 396918 2886700 ~ 2887498 (+) True XLOC_008249
TCONS_00018872 lncRNA downstream 14169 3382814 ~ 3383114 (+) True XLOC_008258
TCONS_00018873 lncRNA downstream 158760 3527405 ~ 3529781 (+) True XLOC_008260
TCONS_00018874 lncRNA downstream 224694 3593339 ~ 3595259 (+) True XLOC_008262
TCONS_00018752 lncRNA downstream 313667 3682312 ~ 3682906 (+) False XLOC_008264
TCONS_00018875 lncRNA downstream 313756 3682401 ~ 3695130 (+) False XLOC_008264
TCONS_00016630 mRNA upstream 33195 3246475 ~ 3251221 (+) True XLOC_008256
TCONS_00016629 mRNA upstream 60968 3219134 ~ 3223448 (+) True XLOC_008254
TCONS_00016626 mRNA upstream 121830 3125136 ~ 3162586 (+) True XLOC_008252
TCONS_00016624 mRNA upstream 394315 2856696 ~ 2890101 (+) False XLOC_008249
TCONS_00016625 mRNA upstream 397103 2857556 ~ 2887313 (+) False XLOC_008249
TCONS_00016635 mRNA downstream 170399 3539044 ~ 3652151 (+) True XLOC_008261
TCONS_00016636 mRNA downstream 306120 3674765 ~ 3689119 (+) True XLOC_008263
TCONS_00016637 mRNA downstream 397456 3766101 ~ 3772525 (+) False XLOC_008265
TCONS_00016639 mRNA downstream 397456 3766101 ~ 3783359 (+) False XLOC_008265
TCONS_00016638 mRNA downstream 397456 3766101 ~ 3783359 (+) False XLOC_008265
TCONS_00016623 other upstream 598710 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 609826 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 925791 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 1410638 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016599 other upstream 1716074 1560665 ~ 1568342 (+) True XLOC_008228
TCONS_00016634 other downstream 137664 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016665 other downstream 2486466 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 3190405 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 3309876 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 3401941 6770586 ~ 6772120 (+) True XLOC_008302

Expression Profile

//