RNA id: TCONS_00018874


Basic Information

Item Value
RNA id TCONS_00018874
length 876
lncRNA type intronic
GC content 0.38
exon number 2
gene id XLOC_008262
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3593339 ~ 3595259 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttttcatatattagaaaaatatatttttgaaaaagcCATGTACGCTGTACTTGCTAGACAACAATAACTGGGGCATGACAgaacacacacacgcacactagaTGGAACCTGCTACACTGATTAGAAAAGGCTACTTTTTTTCTACCgtatttttgatatttggtaTTTCTAGAAAAGTCTTGCATGCTATACTTGCTAGGCAATGACTTTATTAACTGGGCAATGAcaggacacacacagacacacacacacacatacatacgctcCCACACTTTCCCTTGATGAAACCTCCTACATTGGTTTAAAAAGGCTACCTGTCCTCCGAACACATTTTGGATATTCAGTATTTCTGGAAAGAGTGAGGCACAAGACCAATAGAGTGTGGCAAcattgcatgcaaaaaaaaaaaacccaaaaaactaATGCTGCCATGTAAACAGGCCCTAATACACACATGGTCAATTTTgcctaaaaaaaaatacacaatatacACATTACCACATGACCAACCATGTCAGTTGTGTCACTTCACTCCATATTTTTTCTCTCCTGGCCTTTTGGCATAGTCAAGTATCCATTGggtgcgcacttcagaatctcataTCATCCATTAACTAATCCAACAGTTGCATGGTCTACCACTACTAAGGGAATACACTTTTAACatacatttgtacatttatttcatttgtgtACTCTTAATGTTGTGGAATTTGTTCCTCGCGGTATCGAAAATGCGATATGATTCATAGTATAGTATCAAAGTtggaaattccagtatcgtgccAATAACCTgaatataatatatcataatacATCTGTGCTCACAGTAGGAGGGTTTTACCGTAGAATGCAAGGTACTACATGCCGGCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018873 lncRNA upstream 63558 3527405 ~ 3529781 (+) True XLOC_008260
TCONS_00018872 lncRNA upstream 210225 3382814 ~ 3383114 (+) True XLOC_008258
TCONS_00018871 lncRNA upstream 353382 3237595 ~ 3239957 (+) True XLOC_008255
TCONS_00016627 lncRNA upstream 392042 3169974 ~ 3201297 (+) False XLOC_008253
TCONS_00016628 lncRNA upstream 392126 3196151 ~ 3201213 (+) True XLOC_008253
TCONS_00018752 lncRNA downstream 87053 3682312 ~ 3682906 (+) False XLOC_008264
TCONS_00018875 lncRNA downstream 87142 3682401 ~ 3695130 (+) False XLOC_008264
TCONS_00018876 lncRNA downstream 87142 3682401 ~ 3718383 (+) True XLOC_008264
TCONS_00018753 lncRNA downstream 354621 3949880 ~ 3954528 (+) False XLOC_008268
TCONS_00018877 lncRNA downstream 354621 3949880 ~ 3954691 (+) True XLOC_008268
TCONS_00016632 mRNA upstream 214298 3284416 ~ 3379041 (+) False XLOC_008257
TCONS_00016633 mRNA upstream 220360 3284684 ~ 3372979 (+) True XLOC_008257
TCONS_00016631 mRNA upstream 224694 3284416 ~ 3368645 (+) False XLOC_008257
TCONS_00016630 mRNA upstream 342118 3246475 ~ 3251221 (+) True XLOC_008256
TCONS_00016629 mRNA upstream 369891 3219134 ~ 3223448 (+) True XLOC_008254
TCONS_00016636 mRNA downstream 79506 3674765 ~ 3689119 (+) True XLOC_008263
TCONS_00016637 mRNA downstream 170842 3766101 ~ 3772525 (+) False XLOC_008265
TCONS_00016639 mRNA downstream 170842 3766101 ~ 3783359 (+) False XLOC_008265
TCONS_00016638 mRNA downstream 170842 3766101 ~ 3783359 (+) False XLOC_008265
TCONS_00016640 mRNA downstream 170842 3766101 ~ 3796818 (+) False XLOC_008265
TCONS_00016634 other upstream 86916 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 907633 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 918749 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 1234714 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 1719561 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016665 other downstream 2259852 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 2963791 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 3083262 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 3175327 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 5087563 8682822 ~ 8682937 (+) True XLOC_008317

Expression Profile

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