RNA id: TCONS_00016642


Basic Information

Item Value
RNA id TCONS_00016642
length 4405
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_008265
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3766101 ~ 3804420 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGCAACACTTTGCAAGAGACTGGATGAACTTTGGGAAGAGAACAGGGGCAGTGTGGTTCTTTTTACCTGGATCCAGTTCCTAAAGGAAGAgactctgcagtttctgaacatCCAGTCTCCACTTGAGATCCAAACCAACGGTGTCCAGCCTGAGTGTGAATCTGCTGAGTGTCAAGCAGCAGCTGCTGCTGTAGAAGAGCTGGACCAGCGAGCAGTTCAAGTAGCTGATCCTCACAGTGATATATTAACCCAGCTGCTGGATTTTAATGAAGCTCAGAAGAAGAAGGTGTTTGAGGCCACAGTTTTTAACTGTGGAATTTGCTTTACTGAGAACCTGGGCTCCAGCTTTGTGCTCTTCAATGAGTGTCAGCATGTGTACTGCAAGACCTGCGTTAGGGATTACTTCGAGATCCAGATTAAAGACGGCAAAGTCCAGCTTCTTTCCTGTCCTGAGCCAGAGTGCACCTCCCCGGCTACTCCTGCACAGGTGAAACTTCTCGTGAGCCAAGAAGATTTTGCCCGCTATGATCGGCTCCTCCTGCAATGGAGTCTTAACCTAATGACTGATGTGGTTTATTGCCCTCGCAAGAGCTGCAGCATGGCTGTGATGGTTGAGCCTGACCGGACCATGGGCATCTGCCCCTCATGCCAATTTGTTTTCTGCACCCTCTGCAATCGACTATACCACGCCCTCTCTCTCTGCACAAAAATAGAAGAAGAGAACGTACAACGTGTATCACAAAGAAGAATGGCAAGAAacagaaaaaagataaaaagtgGATTAAAGAAAACACTAAACAGTGTCCAAGCTGTGGCGCTAACATACAGGTCAGCAACTACTAGCTCAGAGATCTCACTTTCGTTATATAAAGATGTAATCTTGTCATGGAATTATTTTGTCCTGATTTATTAGTCAATATGAGTGGATTTTGTTTTACAGAAAGATATGGGCTGCAACAAGATGGCCTGCAGCTTCTGTCAGCAGTATTTCTGCTGGATCTGCGTTTCACCTCTCCAGACAAATGACCCTTACAGCCACTTCAGAGACGAGAACTCTCGGTGCAAGTTAACGTCTtagggcgtactcgcactatgtacagttgccttgaaccggccCGAAGTATGCTTGtcctccctcccgtctccccagatggcccgcactcacattacattcgcccgaacacacttacgtcatcgatgatgcgctgttcggTAAGAAGCGCTCACGCTCAGCTCagaggagatttctttagttatattgttttagtcgtttgggaagcagtgacacgcagtcaaatatttcgccgaacagatcaacCACTTtcgacgctcataaacaatcataaatgaagtttatgtataaacaaatttcgagaggatcacgtgcttatgattgctagcagctgacccgcattatctaattcactacgatccaatcagatgactcctaaactactataaataccctggggtttattccattgctatcttcgttttgaagagtccccccttcctcccctactccttCTTCTTAGACGGTTGACACGGTGGCCTAGtgcgtagcactgtcgcctcacagcaagaatgtctctggttcctggctttaccaaaaatgtgagagttgcagagagctagctgtcagCCGGACAATAGAGGAATTGTCTCCAaactattcttcttcttccacttgttttgtcAACACAACGTAGCGTCTCTCTGCTGTATGAACACtataacaggtaaaaacagtcttcgaagctatcatgcgtATTAATTAAGTTGCACCTTATACACAATAgtgcgtgctgattggtttgaatcaagtctttctcatgaattaatgctgcgcTCACAAACGCGTCACGTTGTACTCACCAGTATAGATAGCCATTcaacatgctggaatacacgcaagaATCTATTCGCCGTGATGCTTCAAAAATgagtttcaaaccagaagaacaaatttgcttgaaattttggggtttccgcctggattttgcctacaaCTTTTGTTGTAAATTCAAAAGAttggtattattttaaagaaaaccctttgaattttaataaaacacaattgaaagtgattaaaatgattttatattttatctgTGTTATTGTAATGATTCATCATACATTTCTGGATCCATTTGCACACTTTAATAACAGTAAAAGATCACAGGTGGAAACTCACAAACATAAGATTAAATGGGAACTTTCCAGTAGAATAGTCGAAGAGCAGGCGTGGGTCGAGGTTAGGAGAGAGTAATCTTTAACGAGAGACAGGCAGAGATTCGGGGCAGGCGGCTGGCAGATGGAATCGATATAACTACGCAGTGGTCAGGGCAGGCAGATAGCTTCAGAAACGGTAAGACAGTCCAGGTCGATACACAGATAGGCAATAAACAACAGGGTAACGCTCAAAGATGATGGCCGGGGCTAATCAAAACCTCGCACCGAGTGAAAGGATGTGTGCGTTTATATAAAGAGTCTGAAATTGGTTTCAGCTGTATGTAATCAGTCCCAGTCGAGCATTGGGGAAATTAGAACTCAggcgatggctccctctggtggtcAAACGAGGAACGTTCATGAGTGGATTTCACAACAGTTATAAATAACCCCActaaaaagagccacttttttttgtaaactcacatttgaaagtgtaccttttaggatctttgtggtctaggttgctgtaattagttttggtggttcctgcacatgtcagtaatcagAAAAAAGCTAAATGTCtctatcataatctatgcaaaagttattctacTCCAACGGATAAGAGAACGGAACCCCTTATGTGGGTATTGGGCCAGTACGGACCTTTAAAGTTTAAAGAATGCGGACCAGGTCACGGACCAGGTACCGGGTACACAGAGTTTAGGGGGTAGGGTGAATAGTGGCTTGGcttataaatgaaataattatacctgtcaacattgggatgcgaaaataagggatatgcccaccataataagggatcccCCATCCTTAACCCTCCCCccttaaaaaaatccccaaattactaaatatgttcatttggagctgcttcattgtaaataaacagttaaatggtcagtaatatgttttattaatattatttacaaaagcaaaaaataaatagtattcattagcagcaaatacatttgcaaacagttcagcttattaaaattaatagctattataatgaaatagaaacaagctatcaaatctcattaaccgtttcttcactgtataacatacacattctgattaaagagcaacaaatgaatctcttatttatttagatttttttgtttgattatgtaatttacattaaacaacaggtgggattttaaaaatgcacacatctaacgttataatgaaggCGTTTGTCTGCTTTCCTGACTtgttatgctcatttaggatgaaattagttgtgtttgaaaaaccccccaccaagatcgacatctttagatgttattaatattaattatgtgtatatatctgtttaaacatgcacccaaaaccctAACTTTCATTCCACTTCAAATCGCGGGTACAGAATgcatttgggaaacagcgtctattttactctatggagcgcgtcagctgacagtcacgcactgctatatgactgttttgaggattgcatatgaaggggcgACGGcttttaagagcaaggggtggtCCCTGGTGGCTTGGCAGTATGGGTTGCGCATAGGAAGGCTTTGCTCGTTAAAATTTTTTTGCCACCTCTTCCTcaagactgaaaatacaggagaaatacatgaatatacctttacgggatgatagcaggatagatcTGTAAAATACGGAAgtatcctgggaaaaacgggggGGTAACAGGTATGAAAATAATGCACtttccatgtaaaaaaaaagggCTACTGTTTATGGGCTCTGTAAACACAGGGCTCTGTTTTAATCAGTTTTGGGGGAACTGTTCCATTAAGTGATGCTGAAGCTGCTGGTGTTCTTCACATGCTTACAAAACAGGTATTTTCTTGCACTTTGTCGGTTTATGAATCATATAACCAAGAAATCGCAATTATTtccccacatttatttattagcttGTAACTGATCTAATTTGTCACCCATAAACAGTACTTATGTCTTTTTTCACTTTGCACAAAATGTGGAATAAACCTCTGTTTTTGGACGGTGATGTGAATCAATGTTTTAGCGTTTTATTGCTTTGGTTATAAAAGCATTTGAATTTGTGGTGGTCAAACTGAACATTAAGAAAGACAGAAATAAAATTGTCCAATTAAGTTTCAtggtcgatttttttttttttttttttactgactacATGTTTACAGGTTTGCACTACTACTGATGTGTTTTGTTAAGCTTTTAAAACATAGTTTTATacgttt

Function

GO:

id name namespace
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040625-65 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Acts upstream of or within regulation of canonical Wnt signaling pathway. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human RNF14 (ring finger protein 14).

Ensembl:

ensembl_id ENSDART00000181467

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018876 lncRNA upstream 72173 3682401 ~ 3718383 (+) True XLOC_008264
TCONS_00018875 lncRNA upstream 95426 3682401 ~ 3695130 (+) False XLOC_008264
TCONS_00018752 lncRNA upstream 107650 3682312 ~ 3682906 (+) False XLOC_008264
TCONS_00018874 lncRNA upstream 195297 3593339 ~ 3595259 (+) True XLOC_008262
TCONS_00018873 lncRNA upstream 260775 3527405 ~ 3529781 (+) True XLOC_008260
TCONS_00018753 lncRNA downstream 153062 3949880 ~ 3954528 (+) False XLOC_008268
TCONS_00018877 lncRNA downstream 153062 3949880 ~ 3954691 (+) True XLOC_008268
TCONS_00018878 lncRNA downstream 516273 4313091 ~ 4320629 (+) False XLOC_008269
TCONS_00018879 lncRNA downstream 516273 4313091 ~ 4321015 (+) False XLOC_008269
TCONS_00018880 lncRNA downstream 516426 4313244 ~ 4319929 (+) False XLOC_008269
TCONS_00016639 mRNA upstream 7197 3766101 ~ 3783359 (+) False XLOC_008265
TCONS_00016638 mRNA upstream 7197 3766101 ~ 3783359 (+) False XLOC_008265
TCONS_00016637 mRNA upstream 18031 3766101 ~ 3772525 (+) False XLOC_008265
TCONS_00016636 mRNA upstream 101437 3674765 ~ 3689119 (+) True XLOC_008263
TCONS_00016635 mRNA upstream 138405 3539044 ~ 3652151 (+) True XLOC_008261
TCONS_00016643 mRNA downstream 12178 3808996 ~ 3816757 (+) True XLOC_008266
TCONS_00016644 mRNA downstream 28299 3825117 ~ 3925989 (+) True XLOC_008267
TCONS_00016645 mRNA downstream 835964 4632782 ~ 4635819 (+) True XLOC_008272
TCONS_00016646 mRNA downstream 1172310 4969128 ~ 4985077 (+) True XLOC_008273
TCONS_00016647 mRNA downstream 1191371 4988189 ~ 4999810 (+) False XLOC_008274
TCONS_00016634 other upstream 284133 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 1104850 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 1115966 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 1431931 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 1916778 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016665 other downstream 2058293 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 2762232 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 2881703 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 2973768 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 4886004 8682822 ~ 8682937 (+) True XLOC_008317

Expression Profile

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