RNA id: TCONS_00016670


Basic Information

Item Value
RNA id TCONS_00016670
length 2755
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_008295
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5973909 ~ 6017920 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagttttatattttgtgGCAATTGCACATATTTCCTCTTCGGTGTCCTTGCTGAGCAGAACAATGGCCTGACTGTATCTCTGACAATATGCACATCCACATCCTCCAGCTGTGTGTCATCCAAGCTGCAGCCTCTTATATCTATCTAGAACCCAGGAACGTGAGCGTGTTGCGAGGCAGCGAGGTCCGCTTTAACTGCAGCACCACTGAATCCTGGGACGTCATGAATTGGCGGTTGGGCGAAGACACAATACTGGTCATTTCTGTGGATCATGGTCTTCTGTCCAGATCTGAGAGCGTCTCCACAGTCAATCACTCCATGACCTCTCTGACAGTGTGGGAGTTAATCCTGAGCAACTCTTCGTTCAGTCAAACAGTCCAGGAGATCAGATGCGAACTGCTTCCTAAAAATCTCAAATCATCATCGGCCCTGTTTGTACAAGaaaaaggaTGTGTCAGGATTTTGGAGGGTGACCTGTCAGTTCAACAGGGAGTGTTTGTCACCTTCCATTGCCAAGCTATTGGTTGGTATCCGGAGCCTTCGGTGTTGTGGATGGTCAATGGCACCAGCGTGGACAGAGGCGACTACAACACCAGCAGTATTCAAGGAACCAACGACCTGTTTAACTCCACCAGTGAGCTTAAGTTAGAAGCAGACACCAGCACCACAGTCGAGTGTTGGGCATCTGTGTCTGCTCCTCTGTCTCGGCAAAACAGCAGTGTCAAATTTACTGTAGTGTCACCAAAACCCACACAGGACTACACAGTTGTGATCGCTGTAATAGTGTCGGTGTGTACAATCATTCTGCTGGCAGTTCTCATCCTGATCCTCTGCTACAGAAAAAAACTGACGAAATCAAGCTCTGAAAATAAAGCCAGCTCTTACTCTTCATGGACTGACAATTTAAGCAGTGAGAGGAGGTCTGTTGCTGATGAAACCAGTGGAAAAGTGAATCTAGGATACCACACTGAAGACATAACAAGTAACAGCACTGAAATACATCTCAAAACACAACCCATTAATCAAATGATGTGTTAAGTAAAAACAAGTGGGGATGATGATGTCGAGTTAAAGTGCGTAGCATAAGTGGTGAACCCTTATAAAAATGAACAATTCTATCCACTTCAAAGTGAATATAGCCAATAATTGTTGGTGccgtagggatagtttacagtttaacccaaagaatgagcagtctggtagatgaagaagagccggagtcagagatttaaataaataaatcaagtttactgaagatagtttgcagtttcattcgcagaagccagcttcaacactcgcaatgagttcctaggccgctctgcttacaatcaccaatcaataacaattatactctcacataacgtcattaactgcgtcacacatacaggtgttctaacctgattggttaaaacacagataaactaggaaaatttccacatggggttcgtgcgtacaattctgaacaatatctaaacataaacgtcaggcatcctttagactgattagagctgactccagacctgtgaaatggatcaacaatcaaatagaacacacacacttaaagtataatctgtttctaaTCCAAGACTGACTGTACTCTCAGCcttctttatcaaaactggtttaaaaccggtataatctacattcaggcagttataattgcttactacacaaagtctatcttgaataaaaaacGTTTAAATAATTcaccgtaaaaatagcaaaatcactttagacattttagacaatattaactcgtagaaataacaatagaaacagttgtttccagccctcagttccactcaaggtctccgtgacctctgacctagattggtggcttctgaaaataggtataaagagactggcaaatgcactgaacattcttatattaagcaatgtggtaacttattcattaattaaaatcaattcacagttaaatactgagaaacaggatgatgaaaaggataaatgttggtccatgatgagacggattggaaagcagaaatcagAATCCTTCAGTGCACCTAAACAAAACCATAACTTTATCCTTTAAAAGTTTGGCCACCTAACATCTCTAGGAATAGTAAGATAATTCAAATGAGttattgcataaataaaaaaactacaaagaGTCAACTCAGGGCGAagcagaggcgcagtaggtagtgctgtcacttcacagaaagaaggttgctgggtcgctggtttgagccttggttcagttggcgtttctgtgtggagtttgcatgttctccctgcgttcgtgtgggtttcctccaggtgctccggtttcccccacagtccaaagatatgtgatacaggtaaattgggtaagcaaaattttctgtagtgaatttgtgtgtggatgtttcccagagatgggttgtggctggatgggcatccgctgcataaaaacttgctggataagttggcggttcattccgctgtggcgaccctgaattaataaagggactaaactgacaggaaaatgaatgaatgagagtcaactcaattgtatatatttttttgggtcccactttatattaagtgtccttaactactgtgtacttacatcaaaaaataaatacaatgtacttactgtgattataatgtatttgagaacacttgtggtgcttttgagttgggatagaggttgggttatggacaggtttggtggtttgggtaggtttaagggagggttaaggtgtaagggatggtcaacagtgtatttacaaatgtaattacaaaagttaac

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-1011 Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IGSF5 (immunoglobulin superfamily member 5).

Ensembl:

ensembl_id ENSDART00000126886

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018886 lncRNA upstream 120567 5841557 ~ 5853342 (+) True XLOC_008291
TCONS_00018885 lncRNA upstream 502401 5468360 ~ 5471508 (+) True XLOC_008289
TCONS_00018884 lncRNA upstream 503058 5468098 ~ 5470851 (+) False XLOC_008289
TCONS_00018883 lncRNA upstream 695006 5277903 ~ 5278903 (+) True XLOC_008279
TCONS_00018755 lncRNA upstream 717127 5256501 ~ 5256782 (+) True XLOC_008278
TCONS_00018887 lncRNA downstream 141089 6159009 ~ 6160503 (+) True XLOC_008297
TCONS_00018756 lncRNA downstream 767729 6785649 ~ 6786055 (+) True XLOC_008304
TCONS_00018888 lncRNA downstream 849356 6867276 ~ 6875548 (+) True XLOC_008306
TCONS_00018757 lncRNA downstream 1122490 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00018758 lncRNA downstream 1716569 7734489 ~ 7737531 (+) True XLOC_008311
TCONS_00016669 mRNA upstream 15106 5923992 ~ 5958803 (+) True XLOC_008294
TCONS_00016668 mRNA upstream 27124 5923851 ~ 5946785 (+) False XLOC_008294
TCONS_00016667 mRNA upstream 30064 5923851 ~ 5943845 (+) False XLOC_008294
TCONS_00016666 mRNA upstream 57089 5901970 ~ 5916820 (+) True XLOC_008293
TCONS_00016664 mRNA upstream 343457 5628363 ~ 5630452 (+) True XLOC_008290
TCONS_00016672 mRNA downstream 91941 6109861 ~ 6118668 (+) False XLOC_008296
TCONS_00016673 mRNA downstream 96189 6114109 ~ 6118668 (+) False XLOC_008296
TCONS_00016674 mRNA downstream 99582 6117502 ~ 6118668 (+) True XLOC_008296
TCONS_00016675 mRNA downstream 441927 6459847 ~ 6481984 (+) False XLOC_008298
TCONS_00016676 mRNA downstream 441927 6459847 ~ 6493615 (+) True XLOC_008298
TCONS_00016665 other upstream 118684 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016634 other upstream 2467486 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 3288203 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 3299319 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 3615284 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016677 other downstream 541130 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 660601 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 752666 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 2664902 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016700 other downstream 2713832 8731752 ~ 8731866 (+) True XLOC_008318

Expression Profile

//