RNA id: TCONS_00018757


Basic Information

Item Value
RNA id TCONS_00018757
length 473
lncRNA type sense_over
GC content 0.38
exon number 1
gene id XLOC_008308
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 7064819 ~ 7161877 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTGAAAAAACAGAGATCCACAAAgaacacacacctgaacaaaTACCAGACTATCCGCAAGGCAGGGAAAGTAGTAAGTCTAACCCACACTAGCTTTATTTATAACACTAAATCATGTTATTATAGTAATTCCAATTATGTTTAGTTTTGTGCAAAATCCTCTATTCAGTCAATTATTCTAAgcactgacacacacatacacacacacacgtgtgttttCATTTAATAGCACTACCCAATTGCATGGGTGAATACTATGGTATTTGACTACAGAGGGCAGCTGAAAACTGGTGACATTATCCTCCACTGTTGGTCATCATTTCCtggtgagaacacacacacacacatattctcaATTTACTGGGGTGTGATTGTGACTGTGCTTGTGTAAGCTGCTGGATCTATGTCTCATagggtgtgtgtctgtgaaattaGAAAAACACTGCGTATTTTGTGTAAGACTGAGAAATGA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0016477 cell migration biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0014065 phosphatidylinositol 3-kinase signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0052742 phosphatidylinositol kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018888 lncRNA upstream 264862 6867276 ~ 6875548 (+) True XLOC_008306
TCONS_00018756 lncRNA upstream 354355 6785649 ~ 6786055 (+) True XLOC_008304
TCONS_00018887 lncRNA upstream 979907 6159009 ~ 6160503 (+) True XLOC_008297
TCONS_00018886 lncRNA upstream 1287068 5841557 ~ 5853342 (+) True XLOC_008291
TCONS_00018885 lncRNA upstream 1668902 5468360 ~ 5471508 (+) True XLOC_008289
TCONS_00018758 lncRNA downstream 593607 7734489 ~ 7737531 (+) True XLOC_008311
TCONS_00016691 lncRNA downstream 664897 7805779 ~ 7805920 (+) True XLOC_008312
TCONS_00018889 lncRNA downstream 1621592 8762474 ~ 8764113 (+) False XLOC_008319
TCONS_00016701 lncRNA downstream 1621698 8762580 ~ 8765029 (+) True XLOC_008319
TCONS_00016708 lncRNA downstream 2064382 9205264 ~ 9211131 (+) True XLOC_008325
TCONS_00016686 mRNA upstream 82196 7057050 ~ 7058214 (+) True XLOC_008307
TCONS_00016685 mRNA upstream 82865 7054754 ~ 7057545 (+) False XLOC_008307
TCONS_00016684 mRNA upstream 332447 6786757 ~ 6807963 (+) True XLOC_008305
TCONS_00016683 mRNA upstream 355445 6774994 ~ 6784965 (+) True XLOC_008303
TCONS_00016682 mRNA upstream 356131 6773876 ~ 6784279 (+) False XLOC_008303
TCONS_00016689 mRNA downstream 35300 7176182 ~ 7178865 (+) True XLOC_008309
TCONS_00016690 mRNA downstream 46346 7187228 ~ 7190183 (+) True XLOC_008310
TCONS_00016692 mRNA downstream 852024 7992906 ~ 8151485 (+) False XLOC_008313
TCONS_00016693 mRNA downstream 902869 8043751 ~ 8151371 (+) True XLOC_008313
TCONS_00016694 mRNA downstream 1051833 8192715 ~ 8234946 (+) False XLOC_008314
TCONS_00016681 other upstream 368290 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016680 other upstream 413328 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016677 other upstream 581225 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016665 other upstream 1285185 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016634 other upstream 3633987 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016699 other downstream 1541940 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016700 other downstream 1590870 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016703 other downstream 1898168 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016712 other downstream 2162927 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016719 other downstream 2754976 9895858 ~ 9895986 (+) True XLOC_008335

Expression Profile

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