RNA id: TCONS_00018758


Basic Information

Item Value
RNA id TCONS_00018758
length 1568
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_008311
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 7734489 ~ 7737531 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taaaacacatgctggataagttggcggttcattacgctatGGCAaaccaagattaataaagggactaagctgaaatgaaaatgaacaaatgaataaatgaatgacatgtGCCATAGAAGACAATGCCATGACACAATGAACGcatggtggtgtttgaaggcgtgagatgtgagcacagatgctcttgactaTTCTGGAGGGAACTTATTGTATTATAtcactaatactgaaatgtttcaggtgttttagaatgaccaaaacaatatttcagatgcTTTACAATGCGCTCAGGCTGCTTttaccattcacacacatttttaacatcACATGATATGTTACGACAAAACcaaatgacttttttaatgcccatagtggaatttgtttggtaaaagtgctTCCATCGTTTATGAATATCATCATTGTTAGTTATCGTTTGAACCATCACTACTATGTGAGTGAGATGTGAAACCAACTGTTTACAAAGTGAGGGTAGAAAAAAGGACAAACCTGAGATGATGCATGTTTATGTCCTGATATCGATTTGATCTTTAAAAAGGTTCCCATGGGTGAGCGAGGCAGGGGGAAGCGAGGCTGAGTGTAGACAGATTTTCAGCTGAAGGTGGTGTGGAGGTTGGCAGGGAAGCTTGAGGTTGTGTGCGGATGGGACGGGATAATAGCGCATCAACTCCATGACCTCGTAAAGGAGGATCGACACTCGGGACAATGACTGCATACCGAAAACAAGCAATGTTTCCATGGATGAACCAGGTGAACCAGACCCAGGGAGAAAAGCAGTCAGGACAAATACTAGTGCATACGAAACAAAGGTTTGAAGGTGATGACCTGTTTCTTCACCAAATGAAAAGTGTAACTGGTAAAAAGATGGAGCCTGGAGCACTTCCACTGACAGATGGGCAGATGATACTAAAAAATAGCAGTTTGTTTCAAGAGTGGCAGATATGAGCCTACAGTTAAACTCATGAACAGCAAAAACGACTGATATAAGCAGAAGTTTCTGATAAAGTTTCTACTTGCTGTTTCAAACTTTGGTTTCTCCCACTCATTGCCTTAACTGACTTTGTTGAAGTAGGTCTTTATTCTTCTTTATGTGTGTGACATATGTTATGTTTATGCTATTCTTTGTAGCATAAATGCATGTAAAGTAGGTGTTTAATTAGAAAGTAGTTCATCGCTGTGTTATATCTCGTCATCTGTGGCCTTGATGTAAAGCTTTAGACTGATGTCTGTCTTTTGGTTTAATTAACCGACCGTCAGAATGTGGgcagaaaatatttataaatatatctttGAGAACACATGCTCAGTAAGTCTGAATGAAAACTAGCTGTGTGCTGACCACTTATGTAAATTAACTGCTATGACTTTCTgtaatgttctccccgtgttcacgtgggtttctactgggtgctccggtttcccccacagtccaaaacttGCACTATAGGTCAAGTGGATAAGCTAAATAGTCCGTAAacgtgtgtgaatgaaagtgtatgagtgtttcaaagtgatgggttgctgctggaagggcatccactgcataaacc

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:1905360 GTPase complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018757 lncRNA upstream 593607 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00018888 lncRNA upstream 858941 6867276 ~ 6875548 (+) True XLOC_008306
TCONS_00018756 lncRNA upstream 948434 6785649 ~ 6786055 (+) True XLOC_008304
TCONS_00018887 lncRNA upstream 1573986 6159009 ~ 6160503 (+) True XLOC_008297
TCONS_00018886 lncRNA upstream 1881147 5841557 ~ 5853342 (+) True XLOC_008291
TCONS_00016691 lncRNA downstream 68248 7805779 ~ 7805920 (+) True XLOC_008312
TCONS_00018889 lncRNA downstream 1024943 8762474 ~ 8764113 (+) False XLOC_008319
TCONS_00016701 lncRNA downstream 1025049 8762580 ~ 8765029 (+) True XLOC_008319
TCONS_00016708 lncRNA downstream 1467733 9205264 ~ 9211131 (+) True XLOC_008325
TCONS_00016715 lncRNA downstream 1676622 9414153 ~ 9418151 (+) True XLOC_008329
TCONS_00016690 mRNA upstream 544306 7187228 ~ 7190183 (+) True XLOC_008310
TCONS_00016689 mRNA upstream 555624 7176182 ~ 7178865 (+) True XLOC_008309
TCONS_00016687 mRNA upstream 572612 7064819 ~ 7161877 (+) False XLOC_008308
TCONS_00016688 mRNA upstream 572612 7086327 ~ 7161877 (+) False XLOC_008308
TCONS_00016686 mRNA upstream 676275 7057050 ~ 7058214 (+) True XLOC_008307
TCONS_00016692 mRNA downstream 255375 7992906 ~ 8151485 (+) False XLOC_008313
TCONS_00016693 mRNA downstream 306220 8043751 ~ 8151371 (+) True XLOC_008313
TCONS_00016694 mRNA downstream 455184 8192715 ~ 8234946 (+) False XLOC_008314
TCONS_00016695 mRNA downstream 455189 8192720 ~ 8235529 (+) True XLOC_008314
TCONS_00016696 mRNA downstream 598069 8335600 ~ 8381511 (+) False XLOC_008315
TCONS_00016681 other upstream 962369 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016680 other upstream 1007407 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016677 other upstream 1175304 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016665 other upstream 1879264 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016634 other upstream 4228066 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016699 other downstream 945291 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016700 other downstream 994221 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016703 other downstream 1301519 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016712 other downstream 1566278 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016719 other downstream 2158327 9895858 ~ 9895986 (+) True XLOC_008335

Expression Profile

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