RNA id: TU279890


Basic Information

Item Value
RNA id TU279890
length 794
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G246617
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4495587 ~ 4496458 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCGTAGGGGCAGCTGTCAATCTGACGTCCATGCTTGTCCACAGAGAGAGGTCTACGATGTGGAGAAGCTATGCGATTCCTGTCACGATACACGCGGTCCACCAGGCCATGATGTCGGGACGTCCGACTGGTGTCTAGAACTGTCGTCTGTAAAATAATCTGATTTGTTTAAGGGATCTTCTAAGGCAAACGCATTTTCTTAGGAAAAGGTATCAGAACTTTTGCTGCAGTGTTGGGCAAATAAAAGCAATAAACAGGCTCCACGCTGAAGATGGACTAGCAGTATGAAAGCTTAGAGCAATGAGAACCATCTTGTATGTCCTTATGCTAATGTCTGTAAATGAAGAGCAATGATAAAATGACAATTGAAATGACACTTGTGCAAATGCATGTTTCCATTGGCTTTGTTACTTTTAACTAATTCATTAAATAGACACTACTTAGGACATCCAATATTATCATATGAATCTTTGGTTAATACTTTGCTTTTGGTGTGGGTGATCTGGGTTATTCCTACAATACAGCACGTTTTCATGTCCCTCTCATATATACAGTGATGTCCCTAAAAAGTATATTTGGATATTTATCCACACTAAAATGTCCAAATGTCTTTGGACTATACAGTCAAACCAAAATTTATTCAGACACCTTGAACATTTCATTCATCAATACAGTTTATTCACTATAGTTTAAAAAAATGTTAAAGAGTTAAACTGCGTCAGAAAAAAAATAATCTTAATAATGTCAGATAATGCTTAAGCAAAACATGGTCAGGTCAAAGTGTCTGAATAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279881 lncRNA downstream 10405 4484909 ~ 4485182 (-) True G246609
TU279860 lncRNA downstream 35323 4450002 ~ 4460264 (-) True G246588
TU279867 lncRNA downstream 51773 4434813 ~ 4443814 (-) True G246595
TU279842 lncRNA downstream 69214 4424980 ~ 4426373 (-) True G246573
TU279828 lncRNA downstream 75315 4419322 ~ 4420272 (-) True G246559
TU279869 lncRNA upstream 36338 4532796 ~ 4534368 (-) True G246597
TU279875 lncRNA upstream 60268 4556726 ~ 4557010 (-) True G246603
TU279859 lncRNA upstream 60653 4557111 ~ 4559437 (-) True G246587
TU279908 lncRNA upstream 101494 4597952 ~ 4598294 (-) True G246632
TU279872 lncRNA upstream 158519 4654977 ~ 4655439 (-) True G246600
CI01000057_04467496_04467864.mRNA mRNA downstream 27586 4467473 ~ 4468001 (-) True CI01000057_04467496_04467864
CI01000057_04455612_04467173.mRNA mRNA downstream 28370 4455034 ~ 4467217 (-) True CI01000057_04455612_04467173
CI01000057_04210090_04214161.mRNA mRNA downstream 281426 4209916 ~ 4214161 (-) True CI01000057_04210090_04214161
CI01000057_04195849_04198909.mRNA mRNA downstream 296678 4195795 ~ 4198909 (-) True CI01000057_04195849_04198909
CI01000057_04145896_04146600.mRNA mRNA downstream 348797 4145264 ~ 4146790 (-) True CI01000057_04145896_04146600
CI01000057_04512368_04525620.mRNA mRNA upstream 15419 4511877 ~ 4525620 (-) True CI01000057_04512368_04525620
CI01000057_04543887_04545600.mRNA mRNA upstream 46413 4542871 ~ 4546001 (-) True CI01000057_04543887_04545600
CI01000057_04560576_04573644.mRNA mRNA upstream 63182 4559640 ~ 4573644 (-) True CI01000057_04560576_04573644
CI01000057_04583096_04590861.mRNA mRNA upstream 86453 4582911 ~ 4590861 (-) True CI01000057_04583096_04590861
CI01000057_04597494_04597814.mRNA mRNA upstream 100957 4597415 ~ 4597814 (-) True CI01000057_04597494_04597814
TU279491 other downstream 597896 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 2574166 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 2690434 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 3924559 570530 ~ 571028 (-) True G244358
TU277369 other downstream 3924673 570530 ~ 570914 (-) False G244358
TU279998 other upstream 432286 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 432286 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 714652 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 1427082 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile