RNA id: TU277965


Basic Information

Item Value
RNA id TU277965
length 1366
RNA type TUCP
GC content 0.40
exon number 1
gene id CI01000057_01904867_01921400
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1904533 ~ 1921905 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGGCTCTCAAAGTAGACACCATGGTGGACCTAGCGTTTTACCCGGCCGTGGCGCTGATCTATTTCTTCGCCGTGTTCCAGGCAAACAAGGATGGCCGCGTGGATCTGCCCGACAGTGCTTCGGTCAACGTCTTCTGCCTGTTCGTGCTCATTCAGCCGTTGTGTTTGATCATAGGTGGATACACTGGGATGGCCACGTACTTGATTTCTGCATACGCTTCCTACAGCGTCCTGCCCTGGAAAAAGCCATCAGCTGATCAGCAGGAGGATACGGAGAAAAAGAAGAAGAAAAAGAAGACAAAGACTAATTAAGATACTCTTAATTAAGACTTCAAACAACAGCTTTGCGTAGGAAGGAACAAAGTGTAAATGCGAAGCCATCTCATGCATTTGCAAAGATCACTGAACTGAAGAGGATGATGGTTAATTTACTATAAAGAAAAGGCTTTGCATTTCTTGCACGTGTACCTGGATGTTCGATTTTTTTCTCTCTCAGCTGTGAATTTTAACCTTTGGTCTAAAAACATTTGAAAAGCAGAATCTCTCCTTTAGAAACAGGAAGAAAGTATACATGATGTACAGCCAGGTTTGTGTTTGTGTCTTGTTGATGGACAGCAGTGGGTCGATGGACTGGCTGTCTCTTTAAATGCCACTTTCACAATGTAGTTCCACACCGGCCTGTAAAGACTCTCTACCAACACAGTTTTGGGAGGTTGTAATTTGGAACAAGCTGATTGACTTTGATTTCTGGTCAAACTGCAAATATTTTTTCCATACCTGACCTTACCTACTTGTATATCACTTATACTGTATAATACATTTATAATCATGAAAACTTTGCTGCCTGTACCATTCATGCATATCATTTTTTGTTGTTGTCATTGTCGATGAATCTGAATCTATGCCAGAAAATGAGACAGATCTGATTGGGAATGTACAATGAATTAACAAGATAAATGTACAGAAGTTATAAAATATAATATTTTACAAAATCAAAGTTCAACTGTATGTTGTTTGTATTATGCTCAAACAAAGACAAGTGGTTGTTGAAAAAAAAAAGTGAATATACAGGGGTTTGACAATAAAACACCTGGTTTTAGACCACAATCATTTATTAGGATGGTGTAGAGCCTCCTTTTGTGTTCAATACAGCATCAATTCGTCTTGGGAATGACAGATACAAATCCTGCACAGTGGCCAGAGGGATTTTGAGCCATTCCTCTTCCAGAACAGTGTCCAGGTCACTACGTGATGCTGCTGGAGGAAAATGTTTTCTGTCTCGCTCCTCCAAAATAGTGGCTCAAAAATATTCAGATCTGGTAACTGTGCAGGCAACTCCACATTCATGATCATTAAACCATTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277929 lncRNA downstream 9087 1834717 ~ 1910969 (-) False G244814
TU277927 lncRNA downstream 9087 1906732 ~ 1910969 (-) False G244814
TU277928 lncRNA downstream 11558 1906732 ~ 1908498 (-) True G244814
TU277925 lncRNA downstream 86453 1833351 ~ 1833603 (-) True G244813
TU277924 lncRNA downstream 87000 1832592 ~ 1833056 (-) True G244812
TU278003 lncRNA upstream 133697 2055118 ~ 2077524 (-) True G244886
TU278030 lncRNA upstream 183763 2105184 ~ 2105429 (-) True G244913
TU278027 lncRNA upstream 187671 2109092 ~ 2111515 (-) True G244910
TU278031 lncRNA upstream 190931 2112352 ~ 2112664 (-) True G244914
TU278032 lncRNA upstream 192524 2113945 ~ 2114154 (-) True G244915
CI01000057_01801708_01806454.mRNA mRNA downstream 113602 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01707526_01708449.mRNA mRNA downstream 211607 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01559593_01572133.mRNA mRNA downstream 347206 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01542990_01546030.mRNA mRNA downstream 374026 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_01471460_01487413.mRNA mRNA downstream 432294 1471127 ~ 1487762 (-) True CI01000057_01471460_01487413
CI01000057_02200951_02207673.mRNA mRNA upstream 279159 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02248495_02254279.mRNA mRNA upstream 326925 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02258394_02291730.mRNA mRNA upstream 336973 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02374706_02384095.mRNA mRNA upstream 453128 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02401903_02408835.mRNA mRNA upstream 480399 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
TU277905 other downstream 114903 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1349028 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1349142 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1970314 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 3007323 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 3007323 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 3289689 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 4002119 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU116923 True 1055 TUCP 0.42 1 NC_056709.1 3540001 ~ 3541055 (-)