CI01000057_01559593_01572133


Basic Information

Item Value
gene id CI01000057_01559593_01572133
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1559547 ~ 1572850 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_01559593_01572133.mRNA
ACAATGTGCACACATTTACTCTTAATTGTATGCCTAATATGCCGAAAACGACTTCATCAGTGTTTCTTATCTCATCATGTACAGTAAATTATATATTTTAAATTCAAAACGACGAAATGTGACAAAACTTAGAGAGTAGGTCGTATACTGTCAGTCATTTCCCTTAGAAATACAAAAAAAAAAAAAAAAAAAAAATAGACAATTTGTTATATCTTTAATTTGTGGTCTGCACCGTATTAACTTTCATTTATTTCATATAGCCACGGAGGAAATAATTTTAGTAACGTAAAACAGAAACATTCTCCTGTGGTATATTGTCTAATTCACAATCCTCTAGCAATCTAGCAAAAAAAAAAAATCGAATCCGACAATTGCTTATGTTAACAAGGTTATTCAGCATTCAGACACATAGACTAATTAATATTCATGAGTCAATCCTTTTCAGAGTCCGTCTCCCTTTCAGCAAACCTGCTGGGTAGACGTCACAAAGCCTAATTAATATTAATGATGTTTGGTCACGTGACGGATCTCCCACCTATCATTATAGGTCTCAAACACAGGCGCATGGTCGGATCAGAACTGATGTCTACATGAATTTCTTCCAGCATGATATGTTAAATTCTGTTTTTAGTAGTTTAGTTATTATTCTGAAATGACTCACACATTACTTTAACAGGAGATCAGTGGTATTGCGTCTCTTGATTTTGTTGTTAAATTATGGGTGCTGTGCTGAGGACCCTGACTAGTTGGGTTTCTCGCCTTTGTGACTGTGCAGCATGTCTAAGGTGCAGATGCTGCCCACAGATCAAGAACTCCATTGTAACCCGAATCATGTATGCCTTCATCCTTCTGCTTGGCACCATCATTGCCTGTGTGATGTTGTCGCCTGGTGTTGAACAACAACTTAAAAGAATCCCTGGTTTTTGTAATGGAGGAGCAGGCTCCAGTATACCGGGAATTGAGGCCAATGTTCAATGTGAGAGTTTTGTTGGTTATAAGGCTGTGTACCGGGTTTGCTGTGGCATGAGTTTGTTCTTTCTCACCTTCTCTCTGCTCATGATCAATGTGAAGAACAGCCGAGATCCCAGAGCTGCAATCCACAATGGGTTCTGGTTTTTCAAGATTGCAGTCATGATTGCCGTCACTGTTGGTGCCTTCTATATTCCAGATGAGCCTTTTACCCGAATGTGGTTTATTGTGGGAACCTGTGGAGCATTTTGCTTTATTCTGATTCAACTGGTTTTGCTTATTGACTTCGCCCACTCGTGGAATGAGTCCTGGGTTGATAAAATGGAAAAAGAAAACACAAAGAGGTGGTATATAGGACTGAACTATAGTCTGTCCTTCACGGCTGCTGTTCTCTGCTATAACATCTACACTCAGCCTGAGGGATGCGTGCTCAACAAGTTCTTCATCAGCTTCAATATGTCAATATGCGTCATAGCCTCAGCTCTTTCTGTACTGCCCAAAATTCAGGATTACCAGCCCAGATCCGGTCTTCTCCAGTCATCCATTATGACTTTGTACACCATGTATCTTACCTGGTCAGCCATGACCAATGAACCAGACCGCACATGCAACCCGAATCTGCTCAGCATCTTCCAGCAGATCACATCCTCCACAGTCGCCCCACTGGAGATTGAGAACCAGACTGCCATCATCATCATCGACATAGAGGAAACTGTGCCATCGGCCCCATACTTGCAGTGGTGGGACGCTCAAAGCATTGTCGGACTGGCCATTTTTGTTCTCTGCATTTTGTATTCAAGTATACGTTCTTCCAATACAAGTCAAGTTAATAAACTAACCTTAGCTGCCAAAGACACCACCATTGTGGATGATAGCAGCACAGGAAGTCCTGAGATGGCAGAAGAGGCTTCAACACCACTACATGTGGAGGACAACGAAAGAGACACGGTTCAGTACAGCTACGCTTTCTTTCACTTCATGCTGTTCCTGGCGTCCCTTTACATCATGATGACCCTCACCGGCTGGTACAGTCCTGATGCAGACTACAGTGCCATGACGAGCAAGTGGCCAGCAGTATGGGTGAAAATCTCCTCCAGTTGGGTCTGTCTCACATTATACACCTGGACTCTGGTTGCTCCTATGATTCTCACTAACAGAGACTTCACATAGACGCATTTCTGCAGTAATGTCCTGCAACCTTGATGCTATTATGAAA

Function

NR:

description
Serinc1 protein, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_01559593_01572133.mRNA True 2185 mRNA 0.42 10 1559547 1572850

Neighbor

gene id symbol gene type direction distance location
CI01000057_01542990_01546030 SLC2A10 coding downstream 13517 1542797 ~ 1546030 (-)
CI01000057_01471460_01487413 NA coding downstream 71785 1471127 ~ 1487762 (-)
CI01000057_01356170_01359401 NA coding downstream 199577 1355409 ~ 1359970 (-)
CI01000057_01261251_01262315 NA coding downstream 297232 1260686 ~ 1262315 (-)
CI01000057_01252690_01256408 ZNF740A coding downstream 303139 1252647 ~ 1256408 (-)
CI01000057_01707526_01708449 NA coding upstream 134645 1707495 ~ 1708449 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A coding upstream 228678 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA coding upstream 331683 1904533 ~ 1921905 (-)
CI01000057_02200951_02207673 CDK2.S, CDK2, MGC81499 coding upstream 627730 2200580 ~ 2207673 (-)
CI01000057_02248495_02254279 NA coding upstream 675496 2248346 ~ 2254318 (-)
G244722 NA non-coding downstream 23626 1535630 ~ 1535921 (-)
G244724 NA non-coding downstream 27338 1531913 ~ 1532209 (-)
G244732 NA non-coding downstream 28750 1530593 ~ 1530797 (-)
G244731 NA non-coding downstream 30210 1528941 ~ 1529337 (-)
G244730 NA non-coding downstream 30834 1528032 ~ 1528713 (-)
G244744 NA non-coding upstream 2303 1575153 ~ 1575373 (-)
G244747 NA non-coding upstream 8843 1581693 ~ 1581904 (-)
G244676 NA non-coding upstream 10093 1582943 ~ 1701880 (-)
G244693 NA non-coding upstream 208898 1781748 ~ 1785550 (-)
G244805 NA non-coding upstream 245407 1818257 ~ 1818595 (-)
G244358 NA other downstream 988519 570530 ~ 571028 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 2318885 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 3355894 4927533 ~ 4931420 (-)
G246780 NA other upstream 3638260 5086312 ~ 5283617 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003828 SERINC3 coding NC_007122.7 CM002895.2 2464543 ~ 2469529 (-)