Gene
RNA
| Item | Value |
|---|---|
| gene id | G244724 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 1531913 ~ 1532209 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU277831 | True | 297 | lncRNA | 0.39 | 1 | 1531913 | 1532209 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_01471460_01487413 | NA | coding | downstream | 44151 | 1471127 ~ 1487762 (-) |
| CI01000057_01356170_01359401 | NA | coding | downstream | 171943 | 1355409 ~ 1359970 (-) |
| CI01000057_01261251_01262315 | NA | coding | downstream | 269598 | 1260686 ~ 1262315 (-) |
| CI01000057_01252690_01256408 | ZNF740A | coding | downstream | 275505 | 1252647 ~ 1256408 (-) |
| CI01000057_01235433_01244747 | NA | coding | downstream | 286731 | 1235177 ~ 1245182 (-) |
| CI01000057_01542990_01546030 | SLC2A10 | coding | upstream | 10588 | 1542797 ~ 1546030 (-) |
| CI01000057_01559593_01572133 | NA | coding | upstream | 27338 | 1559547 ~ 1572850 (-) |
| CI01000057_01707526_01708449 | NA | coding | upstream | 175286 | 1707495 ~ 1708449 (-) |
| CI01000057_01801708_01806454 | LHFPL5, LHFPL5A | coding | upstream | 269319 | 1801528 ~ 1806454 (-) |
| CI01000057_01904867_01921400 | NA | coding | upstream | 372324 | 1904533 ~ 1921905 (-) |
| G244732 | NA | non-coding | downstream | 1116 | 1530593 ~ 1530797 (-) |
| G244731 | NA | non-coding | downstream | 2576 | 1528941 ~ 1529337 (-) |
| G244730 | NA | non-coding | downstream | 3200 | 1528032 ~ 1528713 (-) |
| G244720 | NA | non-coding | downstream | 7928 | 1512983 ~ 1523985 (-) |
| G244706 | NA | non-coding | downstream | 83231 | 1448343 ~ 1448682 (-) |
| G244722 | NA | non-coding | upstream | 3421 | 1535630 ~ 1535921 (-) |
| G244734 | NA | non-coding | upstream | 27590 | 1559799 ~ 1560502 (-) |
| G244736 | NA | non-coding | upstream | 31005 | 1563214 ~ 1563431 (-) |
| G244738 | NA | non-coding | upstream | 32012 | 1564221 ~ 1564509 (-) |
| G244740 | NA | non-coding | upstream | 37839 | 1570048 ~ 1570261 (-) |
| G244358 | NA | other | downstream | 960885 | 570530 ~ 571028 (-) |
| CI01000057_03887278_03892054 | ABHD8B, ABHD8 | other | upstream | 2359526 | 3887203 ~ 3892054 (-) |
| CI01000057_04927533_04931127 | CDK4 | other | upstream | 3396535 | 4927533 ~ 4931420 (-) |
| G246780 | NA | other | upstream | 3678901 | 5086312 ~ 5283617 (-) |
