CI01000057_01252690_01256408 (ZNF740A)


Basic Information

Item Value
gene id CI01000057_01252690_01256408
gene name ZNF740A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1252647 ~ 1256408 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_01252690_01256408.mRNA
ATGGCTCTGATGCAGGCCAGTTCCATCGCTGCTCCTAAGAAAATGATGTCGCCACTGGGTCCAGCTTCAGGACACGGATCTGCCCAGAGGGATGTACAGGACCGTGGGACGCAAGGACACATGGTCTTACCAGCAAGCATGACCTGTCCTCCACTGCTTCTGCGGAAGGAGGGTGATTTTACAGCTCCTCGACTTCTGGATGAGAAGGAAATGAGGCCCAATGAAGACTTGCAGCTGAAGAAAAAGAACAGGAAGTCGGGAACACCCTCAAAAGTGAGAGAGCAGGACGGGCAAGCGGGGAAGGCAGTTGTGGATGAAAATGGAAATTGTCCACTTTCAAAAGTCCAGAAGAACTTTATCTGTGATCACTGCTACGGGGCCTTCAGGAGTGGATACCACCTGAAGAGACACATTCTCATCCATACTGGAGAAAAGCCGTTTGCTTGTGCCGTGTGTGACATGAGATTTATTCAGCGTTACCACTTGGAGCGACACAGCCTCACTCACACTGGGGTGAAGCCATATGCTTGTTCCATGTGTGACATGCGGTTTTTCCAACGTTACCACTTGGAGAGGCACAGCCTCACTCACACTGGTATGTGTCATTACATTGGACATTATTTCAAAAACAATATTTGCTTTTTACACTATTACACACTTTAAACATGAAATGGCAGAATCTTTGTTTACATGAGCTATAATTAAA

Function

symbol description
znf740a Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF740 (zinc finger protein 740).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_01252690_01256408.mRNA True 706 mRNA 0.47 5 1252647 1256408

Neighbor

gene id symbol gene type direction distance location
CI01000057_01235433_01244747 NA coding downstream 7465 1235177 ~ 1245182 (-)
CI01000057_01219430_01223491 HNRNPA1, HNRNPA1A coding downstream 29156 1219430 ~ 1223491 (-)
CI01000057_01189209_01190703 SMUG1 coding downstream 61944 1188913 ~ 1190703 (-)
CI01000057_01145522_01147560 NA coding downstream 104875 1144062 ~ 1147772 (-)
CI01000057_01083731_01092073 NA coding downstream 160016 1083714 ~ 1092631 (-)
CI01000057_01261251_01262315 NA coding upstream 4278 1260686 ~ 1262315 (-)
CI01000057_01356170_01359401 NA coding upstream 99001 1355409 ~ 1359970 (-)
CI01000057_01471460_01487413 NA coding upstream 214719 1471127 ~ 1487762 (-)
CI01000057_01542990_01546030 SLC2A10 coding upstream 286389 1542797 ~ 1546030 (-)
CI01000057_01559593_01572133 NA coding upstream 303139 1559547 ~ 1572850 (-)
G244548 NA non-coding downstream 41898 1208498 ~ 1210749 (-)
G244606 NA non-coding downstream 55812 1196572 ~ 1196835 (-)
G244558 NA non-coding downstream 59408 1192945 ~ 1193239 (-)
G244594 NA non-coding downstream 85155 1165176 ~ 1167492 (-)
G244524 NA non-coding downstream 223619 1008238 ~ 1029028 (-)
G244610 NA non-coding upstream 6619 1263027 ~ 1263250 (-)
G244616 NA non-coding upstream 27720 1284128 ~ 1284855 (-)
G244618 NA non-coding upstream 29674 1286082 ~ 1286340 (-)
G244619 NA non-coding upstream 30639 1287047 ~ 1287383 (-)
G244633 NA non-coding upstream 66447 1322855 ~ 1323236 (-)
G244358 NA other downstream 681619 570530 ~ 571028 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 545176 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 663648 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 2635327 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 3672336 4927533 ~ 4931420 (-)
G246780 NA other upstream 3954702 5086312 ~ 5283617 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location