CI01000057_01083731_01092073


Basic Information

Item Value
gene id CI01000057_01083731_01092073
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1083714 ~ 1092631 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_01083731_01092073.mRNA
ATTTTACCTATTGAAAAGCTCTCTGTTGACACTGAGACCATTCAGCTGTCAATATGTCTACACAAGACTTTATATTTGAAAACCATAATAGATTTTTTTACAGAAGGGCCCCAGTGGTTGTGTTTATATATACAATGATTAAACAATTAGAAATGTTGAAAATCATGAAATGAGAATGATTATAGTCTATTAGATTCAGCTGCTACTTATGCTGTGTAAACATTCACAGAAAGAATTCTGTTACCCCATCTCTCATGCAGTTTCACAACACATGGAAATCTAATATAGTCGTCTGCAGTGTCAAGCATTCCTGTAGTTTGTAGTTTAATGGAAAGACACTAAATATAGCACACAAACATGATTGTACATTTCCAGCCCCTTGAGTTATTTCGAAGGACTGAAGATGTTCAGCAATCGTACATCTGATCTATTTGAACATCGGTGTTATGGTCTTCGATGCTGCACACAGACAGTCACAAGTTTTCAAAGTAGGTCTTAGTCACGCCGCTGTTTGATTGATTTCTTTGTCAGTGCAGGCATCTGACCTGATTTATAACTATGGAGGAAAACAGAACTGTGAAATTCAGAGATGTTGCAGAGAACTATTTCTCACAGACGAGGGTGGACTGTCGCTACACTATAAGCAGTCAACACAGTTGGAGCAGTCATGACTGGATAGGTCTATTTAAGGTGGGATGGCTGACAGTGAAAGATTACTACACTTTTGCCTGGGCTCTAGCACCGGAAGGGTACCAAACGGGAACAGATGCAAACTGTAGTGTGGCCTTTTACTCATCTTATCTACCAAAACCCGAAGGGGAGGCGTATCAGTTTGTGTATGTGGATGAACATGGTGAGATTTGTGCGGTCAGTTCTCAGTTTACTTTCTGTGCTCCAAGACCTCTGGATGAACTTGTTACGCTCGAGCAGGAGAAAAACGGTGAGGAAGAGGAGGAGGGAGATGACCTGCTGCTGGTGGTGCCGAAGGCTCTGATCCTGCAGAGTCTCTTAGAAGGATGTCAGCGTGAGTTACACGAGTTGCATAAGAGGCTTGAGGTTGCAGATGATGAGGTGGAGAGAGAGAGGGAGAGATGGAAGACGGACAGAGATGAGTTTGAAAGAGATGTGCAAAGCACACATGAAAACATGACTGCTGAACGTAGTGGACTTCTAGCAGAGAGAGCTGAAAACCATCAGCGAATCAAAGAACTCAAACAGGATGCTGCCACTCTGACTCAACAAAAACAGGACATAGAAGCCGAGCTGGACAGAATGAAGGAAAGAGTTAAAAAGATGACCACACAAAGGCGAGATGAAGAAAAGGAGAAGAAAGATTTGCAGATTGAGAATGAGCATTCACATGCTGAGCTGCAGACCTTGCAGGAGCGTCTGGAGGCCAGCGAGCGCAGCGCTGACGCCCTCCGCAGGGACCTGAGTGAACTGGGCTCCATGCAGAGTCACAGCCATGCAGAGCTGCATCAGGTCAGACTGCAGTCTGCACAGATTAATTTACAACTGTCCCAGGCTAACCTGGCTCTGCGTGAGGGACAATCCACCTGGGCCCAGGAGAGAGAGACTCTGAGACAAAGTGCAGAGTTGGATAAGGATCGTGTCCAGAAACTGAGCCGCGAGCTTCAGAAGAAGGAAGAGTGGCTCCAAGAAGAGAGAACAGAGCGAGAGAAACTGGAAGTGGAGCTGGGGAACGAGAAGGATTGTAACCGGGAACTGAGAGCCAGTCTGAGAGCCCTGCAGAAGGAACAAGAGCAGCATCAGCTGGAGAAACAGTGTTTTATTCAAAAACAGGAGCTCTTAGATCATATCCATGTGCTGGAGCTGAGGCTAGACACTGAGACAGATGCTAAGTGGGCTGAGGCAGCGGCTACACCAACATATTGCATTGATAGACCTCCATCAATTGAAGAAAAGCCACCACAAGAGTCTTTAAGTGTGCTGGACAGTGAGCAGTTTAGCTCTCATGGGTCAACAGAGCAAAGCCAAAAGGATAATGAGAACGATATGATGGCAAGTACCACAAAAATGAAATAAGGTTGATTAATATTAAA

Function

NR:

description
Transcription elongation factor B (SIII), polypeptide 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_01083731_01092073.mRNA True 2063 mRNA 0.45 11 1083714 1092631

Neighbor

gene id symbol gene type direction distance location
CI01000057_00956994_00965947 NR1D4B coding downstream 117767 955633 ~ 965947 (-)
CI01000057_00938618_00949690 NA coding downstream 133935 938071 ~ 949779 (-)
CI01000057_00873279_00873578 NA coding downstream 210136 873274 ~ 873578 (-)
CI01000057_00628126_00628851 NA coding downstream 453548 627715 ~ 630166 (-)
CI01000057_00561471_00562830 NA coding downstream 520857 561229 ~ 562857 (-)
CI01000057_01145522_01147560 NA coding upstream 51431 1144062 ~ 1147772 (-)
CI01000057_01189209_01190703 SMUG1 coding upstream 96282 1188913 ~ 1190703 (-)
CI01000057_01219430_01223491 HNRNPA1, HNRNPA1A coding upstream 126799 1219430 ~ 1223491 (-)
CI01000057_01235433_01244747 NA coding upstream 142546 1235177 ~ 1245182 (-)
CI01000057_01252690_01256408 ZNF740A coding upstream 160016 1252647 ~ 1256408 (-)
G244524 NA non-coding downstream 54686 1008238 ~ 1029028 (-)
G244522 NA non-coding downstream 82367 1001123 ~ 1001347 (-)
G244516 NA non-coding downstream 131707 951714 ~ 952007 (-)
G244379 NA non-coding downstream 147855 933900 ~ 935859 (-)
G244475 NA non-coding downstream 211717 871777 ~ 871997 (-)
G244594 NA non-coding upstream 72545 1165176 ~ 1167492 (-)
G244558 NA non-coding upstream 100314 1192945 ~ 1193239 (-)
G244606 NA non-coding upstream 103941 1196572 ~ 1196835 (-)
G244548 NA non-coding upstream 115867 1208498 ~ 1210749 (-)
G244610 NA non-coding upstream 170396 1263027 ~ 1263250 (-)
G244358 NA other downstream 512686 570530 ~ 571028 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 708953 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 827425 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 2799104 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 3836113 4927533 ~ 4931420 (-)
G246780 NA other upstream 4118479 5086312 ~ 5283617 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003820 calcoco1b coding NC_007122.7 CM002895.2 2111582 ~ 2131280 (-)