XLOC_003820 (calcoco1b)


Basic Information

Item Value
gene id XLOC_003820
gene name calcoco1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2111582 ~ 2131280 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007347
ATATCTCAGGTGATCTGAATCTGCCATCAGCTTCATTTTGTATTAAGTCATATGACCTGATTTTTAGCTATAGCTATGGAAGAAAAGCGATTTGTGCATTTCCGAGATGTTGCTGTGAGCTATTTCTCACAGACGAGAGTGGATTGTCGATACACTATCAGCAGTCAACACGACTGGAGCAGTCGGGACTGGATTGGTCTTTTTAAGGTGGGATGGCTGACTGTGAAAGATTACTACACTTTTGCTTGGGCTCTTGCGCCAGAGGGCTACCAAAAAGGAGCAGATGCAAATTGCAGTGTGGCCTTTCACCCATCTTACCTGCCAATTCCGGGTGTGGAGGAGTATCAGTTTGTGTATGTGGATGAACGAGGCGACGTTTGTGCAATCAGCTCTCAGTTCACCTTCACCGCTCCGAGACCTCTGGATGAACTGGTTACACTGGAGAAAACTGGAGAGGGAGAAGAAGACGGAGATGACCTGCTGCTGGTGGTCCCAAAAGCTCTGATCCTGCAGAATCTGCTGGAAGGATGTCAGCGTGAGTTGCATGAGCTGCATAAGAAGTTTGAAGCTGTGAACGGAGATGTGGAAAATGAGCGGCAGAGGTGGAAGACAGACAGAGATGAGTTTGAAATATTACGAAGCGACATGAGGAGTCAGATTGAGGAGCTCAAAACAAACCTGAGGCACAGCACTGAAAAAACTGAGGAACTGGAGCAAAAACACAAGGAAGCGCAGATCAGCAGTGAAAGCATGTCTGCTGAATTCAATGCACTATTAGCTGAGAGAGCAGAAAACCAGCAGCGGATCAAAGAACTGGAGCAGGATTCTGCAACTCTGACTCAACAAAAACAGGACATAGAGGCGGAGCTTGAAAGAATGAAGGAAAGAGTTAAAAAGATGACCATTCAAAGGCGAGATGAAGAAACGGAGAGGAGAGATTTGCAGCTAGAGAATGAGCAGATGCATGCTGATCTGCGGACGCTGCAGGAGCGTTTGGAGGCCAGCGAGCGCAGCACCGAAGCCCTGCGCAGAGACCTGAGTGAACTGGGATCTTTGCAGAGTCACAGCCATGCAGAGCTGCATCAGGTCCGGCTGCAGTCTGCGCAGATGAGCTTACAGCTGTCCCAGGCCAATCTGGCACTGCGAGAGGGACAGTCCACCTGGGCCCAGGAGAGAGAGACTCTCAGACAGAGTGCTGAACTGGATAAGGACCGTGTCCAGAAATTGAGCCGTGAGCTCCAGAAGAAGGAAGAGTGGCTCCAGGAGGAGAGAAGCGAGCGTGAGAAGCTGGAAGTGGAGCTTGGGATCGAGAAGGACTGTAACCGGGAGCAGAGAGCCAGTCTGAGAGCCCTGCAGAAGGAGCAAGAGCAACATCAGTTGGAGAAACAGGAGCTGTTAGATCACATCCATGTTCTGGAGCTGAGGCTGGACACAGAGACAGATGCTAAATGGGCCGAGGCAGCGGCTACGCCTATATGTCAGTTTGCAAAATCCTACTTGCATAGAGCGGcttaCATCGATAGCCTTTCATCCATTGACGAAAAGCCACTACTAGAGTCTTCATCTGAGCTGTCGTTAAGTGCACTAGACAGTGAACAACATAATGAATCAACAGAGAACAACCCAAAGGATAATGAGGATGATGTGATGCAAGAGGATCTAGAAGTTCAGCCTTTTTCCAGTGGCATTGCTGACCAAATGCTTTCAGAAGCCAAAGACAGTGTCTTCAGTGCTCTGGCTGACGCCCCCTTGTGGTGAAGCATAGGCGGAGGAGAAGATGCGGCTTGTTTACATCAGCGCGTGAGGATCATGTGCTCCTGAACAGTGtgaaatatcaaaacatttttcTGAGCTGGCTTGTTTTATAGCTGGTGTAATTTAATATATGCAAAGAGTGATGTCTGAGGTGTGAATTTTCCAGTTAGCGCAAATGAGTTTCCATTAAGAGGACGGTTACATTACATGCAACTTTTCCAATTATAGATAATTCAACATGAAGCATTGCTCGCATGACAGAGCACAGGGGTGTGATTTTGCATGTATTTTCCAgctatttaaattaaacataattttgtgGGGTGTGCTTTTGTGCTGGTGtcttaaataattaaatctgACACCAAAAAAGCACTTGGAGGAGGCAGCAAATCCCTGTGCTAATGAGTGATTGATTGAATCATAAATTCAAacaattcattcaacatttgATTGATTAGGAAAAGAAGAAAGTGACTGTATTTATGAATATAttgttgaatcactgactcaaatgattcatttaaacacAGATCGTAATAGTCTTCATGAAACAGTCATTGCATTTGaaaggggtctggctgcagacctggtgcagtgcaatctgggctgcatccaatgctttttaatgggctcacctaaccccacccctaaccctacccatcacagtgacgtcactagctccatttgagtgcattgtgtctgacattgcatcgctgagtgatgcagtctcagcttgcatcataaaggctgcatccagatacttttggtgcatttgaactcTTGAGATATTAATTATCTTTGCAGTGAGTTACAGACCCTTTAAAACAACAATGCTTTATGAGATTGTGTCAAACACCCCTATACATGtgcaataatacaatattttcaaTCTAAATAATGTGAATGAATTGTTATGCAAAAATTAGACTTTGGATTTTGTTTAGGAGTGAATCATTTCATTGATGTGTGGGTCCCAGAGCTATTTAGGAGGCCCATAAATATATAATGAGGGTCCCTGGACAGTGATCTTAAAACAATAAATAGACTTTCATCATTTTATTTCCcggtaaatgtatttttttttctttgtatagtTAGGTGTGCTGGTTATGGTTGCTTATTCCATATGACTTGACAAAGCTGTAAGGGCATTTAAGTGCTTAGTTTCCCATTTTTCTAATAAACATGTTTATTCTTCA

Function

symbol description
calcoco1b Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within translational elongation. Orthologous to human CALCOCO1 (calcium binding and coiled-coil domain 1).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005575 cellular_component cellular_component
GO:0003713 transcription coactivator activity molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-126 Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within translational elongation. Orthologous to human CALCOCO1 (calcium binding and coiled-coil domain 1).

Ensembl:

ensembl_id ENSDARG00000016391

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007347 True 2957 mRNA 0.44 14 2111582 2131280

Neighbor

gene id symbol gene type direction distance location
XLOC_003819 nr1d4b coding downstream 144144 1944729 ~ 1967438 (-)
XLOC_003818 faim2b coding downstream 175699 1925804 ~ 1935883 (-)
XLOC_003817 NA coding downstream 191061 1915963 ~ 1920521 (-)
XLOC_003816 NA coding downstream 196128 1911551 ~ 1915454 (-)
XLOC_003815 NA coding downstream 243657 1854431 ~ 1867925 (-)
XLOC_003821 NA coding upstream 79785 2211065 ~ 2222440 (-)
XLOC_003822 hnrnpa1a coding upstream 108795 2240075 ~ 2250767 (-)
XLOC_003823 znf740a coding upstream 121703 2252983 ~ 2297832 (-)
XLOC_003824 znf740a coding upstream 145074 2276354 ~ 2277081 (-)
XLOC_003825 NA coding upstream 184216 2315496 ~ 2316213 (-)
XLOC_003938 BX324177.10 misc upstream 9207524 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 9236314 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 9239175 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 9249624 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 9252553 11383833 ~ 11384130 (-)
XLOC_003814 NA non-coding downstream 506295 1603728 ~ 1605287 (-)
XLOC_003806 NA non-coding downstream 1022953 1065161 ~ 1088629 (-)
XLOC_003826 NA non-coding upstream 315361 2446641 ~ 2448514 (-)
XLOC_003835 NA non-coding upstream 625613 2756893 ~ 2760366 (-)
XLOC_003837 NA non-coding upstream 710818 2842098 ~ 2843883 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_01083731_01092073 NA coding CI01000057 null 1083714 ~ 1092631 (-)