XLOC_003823 (znf740a)


Basic Information

Item Value
gene id XLOC_003823
gene name znf740a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2252983 ~ 2297832 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007351
GGCGTTTCCTGTGTTTGTAAACTGACCTGAGCCGAAATAAAAGCGAATTTGAACACTACCAAGAAAAGCCATCGCCGCCTCATGATAGAGTCCGGTGAGATCTGTGTGACACTGGCTCTGAACTGACATCTGCACATCTCTTCTGTCTGAACTGCTGTCCGTCACCATGTCACATATACCCGGCAGCTCGGTCCGGGACCACATGAAATGGGCAGGGCTGTTGGGATGTGAAGCCGTATTGTCCAGCATGGCACTGATGCAGGCCAGCTCCATCGCTGCTCCCAAGAAGATGATGTCTCCGCTGGGTCCGGCATCTGCTCACGGGTCTGGCCAGAGGGATATGCAGGAACGTGGGACACAAGGACACATGGTCTTACCCACCAGCATGACCTGTCCTCCACTGCTTCTGCGGAAGGAGGCTGATTTTACAGCTCCCCGACTGCTGGATGAGAAGGAAATGAGACCCAGTGAAGACATGCAGCTGAAAAAAAAGACCAGGAAGTCGGGAACACCCTCAAAAGTACGGGAGCAGGACGGCCCGGCGGGGAAGGCCGTTGTGGATGAAAATGGAAACTGTCCACTTTCTAAAGTGCAGAAGAACTTTATCTGTGATCACTGTTACGGGGCCTTCAGAAGCGGATACCACCTGAAGAGACACATCCTCATTCACACTGGAGAAAAGCCATTTGCTTGTGCAGTTTGTGACATGAGATTCATTCAGCGTTATCATCTGGAGCGACACAGCCTCACTCACACTGGGGTGAAGCCGTACGCTTGCTCGATGTGTGACATGAGGTTTTTTCAGCGTTACCACCTGCAGAGACACAGCCTCACTCATACGGGGGTGAAGCCGTATGCTTGTTCCATGTGCGACATGAGGTTTTTCCAACGTTACCACTTGGAAAGACACAGCCTCACTCACACTGGAGAGAAGCCGTTTGCGTGTGACATGTGTGACATGCGCTTCATTCAGAGGTATCATCTGGAGCGACACAAGCGCGTTCACAGCGGAGAAAAGCCTTACCAGTGTGAGCGCTGCCAACAGAATTTCTCACGCACAGACAGACTGTTGAGACACCGGCGGTTGTGTCAGGGTCGTGGCGTGACGAAAGTCGAAGCGCAGCCGTGCCCTTACACACAGGAGCCTCCGCCGGCCCCCACGCCCACATGGAGCCCCCTGCATCCGGCCCCAGGACGACTGGCCGTGTGACATGCCCTAAGAAGACAACACACCTCTGAACACCACCACTGCCGAGTGCAGACCGCTTCCCTCCTCAGAAACACACACGGTTTGACCACCCAGGCTTCTTTTGTACTTTTTGGTAACACAATTAGAGGGTTTTATGGTACTTTAAAAAGAGACgaggaacaaaaacacacacacacacacatggctgatGTGGGAAATATGTTACTAACCAAAAAACAAAAGTGGTACAACCTGTCATATATAAACTGATATTCATACACTATGTAATAGACTGTTTataacactgaagcacacaaagaaacacacacactcatcacacATCCACAGGACAACATTTGATCTGATATTGTAAGTGTGTGAAATTGAAAGATGTGTATATTAATGTGTGTAACAGCTGGTTTGTTCTGTCTTTGTCATACAAATCTGACTAGAAACCATGTTTGATCGTCAACTCGCTCAATCAGAAATTATAATTTGCATTAAGAAAATGAAGCCTATTTTAGGACcagattgtttttttattatttagcatattttagggttgtcacgatactagaATTCGGTATCAATCGATGCTGAAATTTTAAAGACGTCCCTTTCCcgttaacatttgagcgctgttgagcgaTTTCATAAGCAGTGCTGATTgaccattgtgttcacgtgctcaacagaaatgactgtgattggtcctgaaggtcatcagttcaccaaattcaccgctgtttactgagtgtaaccacagagaCAGGGACACTCGAGCATTTTAAAGCTGCggttcatcagcggatcgctcacatgccagcttatagacaaaccagctgatcgacgtgactttgtTTACACtcggtaaacagtggtgagttcggtgaactgatgaccttcaaggccaatcacagtcatttctgttgagcacgtgaacacaatagcaaatcagcgctgttttagaACGCGTTCagatgttagtgggaaatggacgtCTTTAAAATTACAGTACCAATTGGTACCAAATTCTAATAACGTGACAACACTAGAATATTTGATTGATATTATAAAGAAGAATATGCATTTTGGTCTCAAATATGGATAATTATATAAATGCATAAGCACTGAAGGCTTTTAAAGTTTGCTCTACTGACTTTTGGAAATTACTAGtaattaataaacaggaaaaacactacaaattatgaattaaatttaagtttaaaatgctttaatgaGCAAGACCTTCAGTACAgtaattattgttttatgttaataaatCAAACATAACTGACTACTTTTATTTTCATAAGGTATTAAACAAGACTAATAAATAGCTTTTTACATAGTTTTGCTTGttaataatctaaatgtaatactAAAAATTAAATGGTCCCAAAAATAGGCATTTTCTATgtgctaatatattaattttttctGATTTTGGATGATATTATGGGCAAAAATGTGCGACTAATTTTGACTACATTAATGAAAACGTCCAAAAGACCCACATTATGTTATGTACAGATTTATATGTGCGACATTATTCCATCTTGTGGCCTTAGGATGTGCTCATGTGTATTCTATACTATTTTggtttggattttttttactcCTTTGTTATGAAAAGATGATATACTTTTTATTTGACTGAATCGCCACAGGTCAGAAAGGCTGcctttttagttttgtttctttCCAAAGTCATGTAAAGGTCGTATTGCATCGTGAAGGAGCTCAGCCGTGTTGCTTCTCTGTGGATGTAGTGTTTTCCGCTGTAATCTCTGCGATGGAGGAGTTCGagcagtgttttattttattttactttatgcaATGCCTTCACGAGCGGTCGACCTCAAACAGAGCAAAAAACGCTGATGTTTCTGTTGCGCCACATGATATCAGCTTTTTAACGTGTCATATTATCTGCTGTTGGACGAGGCTCTCGGCTGAATGGACTGAATTGGGCATTTCTGATGGAAACGGAGGGACGTCTGCTGTTTATTGACTGAAGATTGCTGCATTTTTATGTAATGactgaatatttttctttttatcgtTACACGTATGTTTATATATTACTGAACTGGTTAAACCTCTTAGTTCTATAGCAACAAACTTTGTGTATTTTGAGGACCTTTTTActctaatataattttaaaacactGGAGAGATACATGTGTGAAATGATAATCTATAAATGGACATATACAGTTCAAAA
>TCONS_00007352
TATTCAGGGGTGAAGCCGTATGCTTGCTCGATGTGTGACATGCGTTTTTTCCACCGTTACCATCTGCAGAGACACAGCCTCACTCATACGGGGGTGAAGCCTTATGCTTGCACCATGTGTGACATGCGCTTTTTCCAGCGTTACCATCTGCAGAGACACAGCCTCACCCATACGGGGGTGAAGCCGTACGCTTGCTCGATGTGTGACATGAGGTTTTTTCAGCGTTACCACCTGCAGAGACACAGCCTCACTCATACGGGGGTGAAGCCGTATGCTTGTTCCATGTGCGACATGAGGTTTTTCCAACGTTACCACTTGGAAAGACACAGCCTCACTCACACTGGT

Function

symbol description
znf740a Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF740 (zinc finger protein 740).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5064 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF740 (zinc finger protein 740).

Ensembl:

ensembl_id ENSDARG00000070939

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007351 False 3416 mRNA 0.42 10 2252983 2297832
TCONS_00007352 True 345 mRNA 0.52 4 2263461 2270069

Neighbor

gene id symbol gene type direction distance location
XLOC_003822 hnrnpa1a coding downstream 2216 2240075 ~ 2250767 (-)
XLOC_003821 NA coding downstream 30543 2211065 ~ 2222440 (-)
XLOC_003820 calcoco1b coding downstream 121703 2111582 ~ 2131280 (-)
XLOC_003819 nr1d4b coding downstream 285545 1944729 ~ 1967438 (-)
XLOC_003818 faim2b coding downstream 317100 1925804 ~ 1935883 (-)
XLOC_003825 NA coding upstream 17664 2315496 ~ 2316213 (-)
XLOC_003826 NA coding upstream 148809 2446641 ~ 2448514 (-)
XLOC_003827 slc2a10 coding upstream 150949 2448781 ~ 2456786 (-)
XLOC_003828 SERINC3 coding upstream 166711 2464543 ~ 2469529 (-)
XLOC_003829 si:ch73-267c23.10 coding upstream 173550 2471382 ~ 2478374 (-)
XLOC_003938 BX324177.10 misc upstream 9040972 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 9069762 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 9072623 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 9083072 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 9086001 11383833 ~ 11384130 (-)
XLOC_003817 NA non-coding downstream 332462 1915963 ~ 1920521 (-)
XLOC_003816 NA non-coding downstream 337529 1911551 ~ 1915454 (-)
XLOC_003815 NA non-coding downstream 385058 1854431 ~ 1867925 (-)
XLOC_003814 NA non-coding downstream 647696 1603728 ~ 1605287 (-)
XLOC_003835 NA non-coding upstream 459061 2756893 ~ 2760366 (-)
XLOC_003837 NA non-coding upstream 544266 2842098 ~ 2843883 (-)
XLOC_003838 NA non-coding upstream 678771 2976603 ~ 2982382 (-)

Expression


Co-expression Network