XLOC_003828 (SERINC3)


Basic Information

Item Value
gene id XLOC_003828
gene name SERINC3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2464543 ~ 2469529 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007356
atggaaaaagaaaatgaaaaaaggtGGTATATAGCTTTAGTGTTGGTAACAGGACTGAACTATATTCTGTCCTTCTCGGCGGCGCTTCTCTGCTTCAGCATCTACACTCAGCCGGAGGGATGTGTGCTCAACAAGTTCTTCATCTGCTTCAACATGTTATTGTGCGTTACAGCGTCTGCTCTGTCTGTGCTGCCCACAATACAggaatacCAGCCCAGATCTGGTCTTCTACAGTCGTCCATCATGACTTTGTACACCATGTATCTTACCTGGTCAGCCATGACAAATGAACCAGACCGCACGTGTAACCCGAGTCTGCTCAGCATCATCCAGCAGATCACATCCACCACCGTCGCCCCGCTGGAGATCGAGAACCAGACGGCCACGGTGCCGACAGCCCCGTACCTGCGCTGGTGGGATGCGCAAAGCATCGTCGGCCTGGCCATTTTTGTTCTCTGCATTTTGTATTCAAGCATTCGCTCTTCCAATACTAGTCAAGTGAATAAATTAACCTTAGCGGCTAAAGATGCCACGGTTCAGGATGAAAGTGCCGCAAGCAGTGCAGAGGCGGCAGAAGAAAACACCACAGCACATCATATGGAAGATAATGAGCGAGAGACGGTTCAGTACAGCTACGCTTTCTTCCACTTCATGCTGTTCCTGGCGTCTCTTTACATCATGATGACGCTCACCAACTGGTACAGTCCTGACACAGACTACAACGCCATGAGGAGTAAGTGGCCGGCGGTGTGGGTCAAGATCTCCTCCAGCTGGGTCTGTCTCACTTTATACACCTGGAGTCTGATCGCTCCCATGATCCTCCCCAACAGAGACTTCACGTGA

Function

symbol description
serinc3 Predicted to enable L-serine transmembrane transporter activity. Involved in defense response to virus; detection of virus; and innate immune response. Predicted to be located in Golgi apparatus. Predicted to be active in membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000086133

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007356 True 843 mRNA 0.50 7 2464543 2469529

Neighbor

gene id symbol gene type direction distance location
XLOC_003827 slc2a10 coding downstream 7757 2448781 ~ 2456786 (-)
XLOC_003826 NA coding downstream 16029 2446641 ~ 2448514 (-)
XLOC_003825 NA coding downstream 148330 2315496 ~ 2316213 (-)
XLOC_003823 znf740a coding downstream 166711 2252983 ~ 2297832 (-)
XLOC_003824 znf740a coding downstream 187462 2276354 ~ 2277081 (-)
XLOC_003829 si:ch73-267c23.10 coding upstream 1853 2471382 ~ 2478374 (-)
XLOC_003830 dgkab coding upstream 10764 2480293 ~ 2504750 (-)
XLOC_003831 cnpy2 coding upstream 70610 2540139 ~ 2549140 (-)
XLOC_003832 nab2 coding upstream 101957 2571486 ~ 2594045 (-)
XLOC_003833 si:ch211-160o17.2 coding upstream 147287 2616816 ~ 2632747 (-)
XLOC_003938 BX324177.10 misc upstream 8869275 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 8898065 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 8900926 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 8911375 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 8914304 11383833 ~ 11384130 (-)
XLOC_003821 NA non-coding downstream 242103 2211065 ~ 2222440 (-)
XLOC_003817 NA non-coding downstream 544022 1915963 ~ 1920521 (-)
XLOC_003816 NA non-coding downstream 549089 1911551 ~ 1915454 (-)
XLOC_003835 NA non-coding upstream 287364 2756893 ~ 2760366 (-)
XLOC_003837 NA non-coding upstream 372569 2842098 ~ 2843883 (-)
XLOC_003838 NA non-coding upstream 507074 2976603 ~ 2982382 (-)
XLOC_003843 NA non-coding upstream 915575 3385104 ~ 3494964 (-)
XLOC_003853 CR450797.1 non-coding upstream 1484194 3953723 ~ 3953837 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_01559593_01572133 NA coding CI01000057 null 1559547 ~ 1572850 (-)
bowfin (Amia calva) AMCG00010826 LOC103361910,LOC100710164,LOC106570256,LOC105009339 coding CM030133.1 CM030133.1 1850784 ~ 1859425 (+)