XLOC_003833 (si:ch211-160o17.2)


Basic Information

Item Value
gene id XLOC_003833
gene name si:ch211-160o17.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2616816 ~ 2632747 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007362
ACTCTAAACATCTGCGCTAAATGTGCTGTCGTCACAGGGCAGAAATGATGTGTGTTCACCGACTGAGGATCAGAACCGGACTGTGACTCGTGGAAAACGGTCAGATTGAGCTCAAGGACACCGCTGCACATTCACGgctGCAGGTATGGCAGATTTGCTGCGATGTCTCCTGAACGTGGCTGAAAAAGCCGCCAATGTGGCCCGGGTCTGTCGGCAGGAGGCCCCGCTGTTTGAGCTCCTCGTACAGGAAAAGACCGGAGCAGACAAAAACAAGAAATTCGTCCAGGACTTTAAGACGCTTGCTGATGTGGTGATCCAGGAAATGATTCGCCATGATGTTTGTGCTCAGTTTCCAGAGCTGACTGGCTTTATTCAGGGAGAGGAATCCAACAAGTTTGAAAATGGACTTGgGGAGAGTGTTACTGTGACTGTATGCGCTCAGCAAGAAGACACGACTGCTCTGCTGGCTAAAGTTCTGGATGGAGATCAGACCGCTGCGTCTCTCCTGTCTGAAGTGATCCACCAGGACCTCCAGCTTCAAGATCAGACAGCGGAATCCCTGCAGATCTCCATCAGCCCTGCCGACGTGGGCATCTGGATTGATCCCATCGATGGGACAAGCCAGTACATTGAAGGAAAAGAGGAAGAGGAGCCAGATGAAGGGTTTTGCGTGTCCGGACTGCCCTGCGCTTTGGTTCTGGTTGGAGTTTACTTGCGAGCCACTGGTCAGCCAGTTATGGGTGTCATAAACCAGCCATTCAACCGCAAAGACTCCACAGGGAAACGATGGAAAGGCCAGTACGTGTGGGGTGTTTCGTATGAAGATGTGAACGTATGTTCGCTCACACAACGCAGACAGTCACTGGCACAGAAGAGCGAACACCTATCCGTATTATTGAGCTCCAGTGAGCGGCGCGAGGTGAAGGACGCGCTCGCGGCGCTCTCCAACGGCTCGCTAATGTTCGCATCCGGCGCCGGATACAAAATCCTGTGTGTTTTGCAGGGTCTAGCAGATGTGTATGTGTTATCTGAGGGAAGCACCTTTAAATGGGACTCGTGCGCTCCTCATGCCATTCTGCGGGCTCTGGGTGGTGGAGTTTCTGATTTGAGCGCATGTATGCAGGCTAAAAACACTGGGTACGCCACTGAAATCACATACCATCAGCCCTCAGGGGACCATCAGAGTCACGGTGTGGATCGGTGGGCCAATCAGGGGGGAATAATCGCATATCTGGACTCCAGCATCATTGAGAAAGTCATAGCGGTGCTTGCTGGAAAGATCTGACTAATATATGAAGTGCTTATCCATGTTTGGAACTAAACAATCACACAGTAGGGTTTTATTAGTGAAGTAAGAGATAAactacatccaggaggttgttacaAGGGTTTATTCTGTGAGAACAACCGTCTGGATGTACTTTATGTTGCTTGATACattgatataaaatatacaaaccacacacaaaacattgttcaaagctgtaatagtttattaGTTCTTTAATTCAATGCAAAACTGACTGAATtgtaaacagctgatggagtatacactaacctgtgcatcaTTCAGCCACAGGATGGCGCCAAACTGCAAAGCTGACAAACACGAAGCCATTTAAATGAAGTTTACTATACAATCACTGTATTTGTGATCATGTATCCATGGTTAGTAGAAGGGATTTCATTTCATATACATTATAAGTTGTAATTATTCCAAACTCATGATGGATAGTATGTTTAGTTTTATGCTATATTTGATCTTCTTTATGatgatagttttattttatgatttatcaGCATATTCAAGTTTTAAATTAAGGCTATAGCGTATTAGAACAAAATCATAATGCTTATCTGCAATGTTTAGTTgggtaaataagtattgaacacgtcaccatttttcccagaaaacacatttctaaaggtgccgttggcTTGAAATTTTCCTAGATgctggtaacaaccaaagaaatccatatatgcaaagaaaacaaatctaattagtttacaaatgaagttatgcgtaataaaatgaaatgacgcaggggaaaaagtgttgaacacatgaagaaaggaaggtgtgattcggcagtgaaagcccagacagcagctgaaatctctcagtggtTCTTCAGCAAGcgtctgcccttcctcagtgtaaatgaacatcagctgcttcatcaacatctacatcagcaggaggatgaagatgaaaccagagtggacatttcagcaagacaatgatccaaaacacagccaagagactctcaaatgctttcagagaaagaaaatcaagctgtagaatggcccagccaatcacctgagctgAATCCTATAGAGAATACAGaagaaagctcagatttgatagacgagacccacagaagcatcaagatttatacactctgttgaagtctgtgagaaactcacacctgagcaatgcatgtggcTTCATTCTCCACATCAGAGGCGTCTTTAGGTTGCCATCAATGAATTtgatataaagtattaaacacatttcagtagttcagcactgcTTTCTCCTGTCATTTCATTCTTATTACACACaactcttttgtttttgttcagttttagttttatgtttgtattatttgggTTTTACTAAAATCTGCTTCAATTtaatgtcaacagctccttcagaaatattattcccaggataAAACCTgacagcccctttcacacagtgataccggtaaatattcgGAAAATTTActgaacgactttaccggtatattcaaaaaagcgctgttcacacaggcgaggacgttacggaatttttccggaaaagagcattcacacatccattccaaaatagcggtaaattctgacatcattcaccacaaatgagctttaaacggctgcgcttgtatttgtaaacatttgactaaattacaaactcttttgatgaccAGTATTGTAAACAACGttcacaggatcatattcgcatgtcgagatgttcataatatgtgcgtgtgcaggcgctcacaggctgtttcatgggcacacgcaaagcttgaaggtaaacaaacaacggcttatcataagcatcttatcgatgattatttacacagttggcattaagaagaacatataaacgtgatctgactaacttctagcagctaaatgtgtctggaaaaatattcaaaggcttttattctcacaaaccgcgcggacgtaaatgcgtctgactgttgtgattggctaaagcagaagtcttacgtcagcacgttctagacgtgaacgcgcttattccggaaatctttCTTCTGCGTTCAcgcagcgcagcattccggcaaattgccggtaatgttacaacttctctttccggaaaatagccagaacgaatttaccggtattttcaaaaaggacctgttcacacatacaacctttccggaaaattaccggcaattttccggaaaggtctgtatgtgtgaaaggggcttatatgtttttaattagtttgattTTGTGTCATCCTCGTGATGTGAATGTCCTGATGAAGTGAAGTGTTACTGAAGGAAAGCAggattatcacacacacacacacacacacacacacacacacatgaagatTCATGGCCTTTTATggtgttttgtaatatttgacaGTAAGAAGTGAGTCCTGAGAGTGAAAACAGCGGAAACACATCTGACCTGCTGCAGGTTTCACCTCTTATTCTGAAGTGTTGGTGGGTAATTATGAATCTTGTGTAAAAATAGTACTGTTAAATGTTGGGTAAGAAATGAtagattattaaattaaatataaggcACTGGTCATATTTAAAAGCTGTAATAAAGCCGTTGTGGATTTTTAAATTCT
>TCONS_00007363
GCGATGTCTCCTGAACGTGGCTGAAAAAGCCGCCAATGTGGCCCGGGTCTGTCGGCAGGAGGCCCCGCTGTTTGAGCTCCTCGTACAGGAAAAGACCGGAGCAGACAAAAACAAGAAATTCGTCCAGGACTTTAAGACGCTTGCTGATGTGGTGATCCAGGAAATGATTCGCCATGATGTTTGTGCTCAGTTTCCAGAGCTGACTGGCTTTATTCAGGGAGAGGAATCCAACAAGTTTGAAAATGGACTTGgGGAGAGTGTTACTGTGACTGTATGCGCTCAGCAAGAAGACACGACTGCTCTGCTGGCTAAAGTTCTGGATGGAGATCAGACCGCTGCGTCTCTCCTGTCTGAAGTGATCCACCAGGACCTCCAGCTTCAAGATCAGACAGCGGAATCCCTGCAGATCTCCATCAGCCCTGCCGACGTGGGCATCTGGATTGATCCCATCGGTATAGAGCTTGTTGTTTTGAATCGACCTTTTAACTTGCTGACTAATTTCCTTCAAACCATGAATAATATATAGATGAATAATAATTGTTCACTT

Function

symbol description
si:ch211-160o17.2 Predicted to act upstream of or within inositol phosphate dephosphorylation and phosphatidylinositol phosphate biosynthetic process. Orthologous to human INPP1 (inositol polyphosphate-1-phosphatase).

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0046855 inositol phosphate dephosphorylation biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-141219-3 Predicted to act upstream of or within inositol phosphate dephosphorylation and phosphatidylinositol phosphate biosynthetic process. Orthologous to human INPP1 (inositol polyphosphate-1-phosphatase).

Ensembl:

ensembl_id ENSDARG00000002897

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007362 False 3844 mRNA 0.42 6 2616816 2632747
TCONS_00007363 True 547 lncRNA 0.48 3 2625032 2628137

Neighbor

gene id symbol gene type direction distance location
XLOC_003832 nab2 coding downstream 22771 2571486 ~ 2594045 (-)
XLOC_003831 cnpy2 coding downstream 67676 2540139 ~ 2549140 (-)
XLOC_003830 dgkab coding downstream 112066 2480293 ~ 2504750 (-)
XLOC_003829 si:ch73-267c23.10 coding downstream 138442 2471382 ~ 2478374 (-)
XLOC_003828 SERINC3 coding downstream 147287 2464543 ~ 2469529 (-)
XLOC_003834 si:ch211-160o17.6 coding upstream 58496 2691243 ~ 2700397 (-)
XLOC_003835 NA coding upstream 124146 2756893 ~ 2760366 (-)
XLOC_003836 lhfpl5a coding upstream 197065 2829812 ~ 2838699 (-)
XLOC_003837 NA coding upstream 209351 2842098 ~ 2843883 (-)
XLOC_003838 NA coding upstream 343856 2976603 ~ 2982382 (-)
XLOC_003938 BX324177.10 misc upstream 8706057 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 8734847 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 8737708 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 8748157 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 8751086 11383833 ~ 11384130 (-)
XLOC_003826 NA non-coding downstream 168302 2446641 ~ 2448514 (-)
XLOC_003825 NA non-coding downstream 300603 2315496 ~ 2316213 (-)
XLOC_003821 NA non-coding downstream 394376 2211065 ~ 2222440 (-)
XLOC_003817 NA non-coding downstream 696295 1915963 ~ 1920521 (-)
XLOC_003816 NA non-coding downstream 701362 1911551 ~ 1915454 (-)
XLOC_003843 NA non-coding upstream 752357 3385104 ~ 3494964 (-)
XLOC_003853 CR450797.1 non-coding upstream 1320976 3953723 ~ 3953837 (-)

Expression


Co-expression Network