XLOC_003832 (nab2)


Basic Information

Item Value
gene id XLOC_003832
gene name nab2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2571486 ~ 2594045 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007361
CGCCTACAGACACGGTGATCTCCGGCGCCCATCCACCACACACAACCCATGCGTTCTCTTGCATTAAAACCAGACTCCCATTTTAACTACATAATAGCGCTGTGTACATAATTGATTTCTACCAAACATTATAGGCAAACATGTTAATAAATGGAGCGAATTCCCCGTGCATCCACACCCGAAGAGGAGGGCGCTCCCCCCAGAGCCTAGCCCGGAGAGGAAGGCTCTTATTCGGTCAGATGGCGTGCCGCAGTCCGCCCACGCGTTTCTCGCGCCCACACAGCAGCGAAAGGAGCGTCATTAACTGAGCGCACAGCAGAACAGAGAGACAACAACACAAGAGTTTCAAGAACATTCACATCTGCAGAATAAGGTCTTACAAGCACTGAAAACAACACGAAATAGGGCGTAAAGGTTGAAGTCTAATTACAGAACCAAAAAGTTTGACTCGTTTGAGTGGCAGAAGTTTTCACTGGAGGCTCAAGATTCCGTCTTGAAGACTCTCGAGCTGATCATCAGGATGTCTCTGCCACGAACGCTGGGTGAACTGCAGCTCTACCGAGTTTTACAGCGAGCCAACCTGCTGATGTACTACGACACCTTCATCCAGCAGGGCGGCGATGATGTCCAGCAGCTGTGTGAGGCTGGCGAAGAGGAGTTTCTTGAGATTATGGCTCTTGTGGGCATGGCTACAAAACCCCTGCATGTGCGGCGATTACAGAAAGCGCTGCGCGACTGGGCATCAAACCCAACGCTATTCAACCAGCCACTAACCACCAATGTGGCTCCATGTGGAGTTCCTCTGCTTAGAATCGACAGTGCTGGCAGTGCCAACTCAACAATAATGGGTGCAAGAAAATCTATGAGCAACGGTCAACCAGGATCTCCATGTGAAAGAGAGGAAGTTGGCTCCTGCCTTACGCCGCTTAGAGAAAACAGTCCAAAAAGTCCCTGTTCGCAGGCATCTCCAATACCTCCAGACCACCATCTGTACAGGGAAAAGCTGTCCCCGATGGACTCTCACTGGCTCAGCCCTGAAATATACGGATCTGCAGATTTAGATGAAGATCAACCCGTGCCTCCTTTACCCTTTGCTTGTCATTCTCGTCTTCTGGGTCCACCAACGCcaacatcatcttcatcatccactTTGGTCTCTCCGTGGCCTGGAGGTCAGCTGGATCCGGACACTATTAAAGCGGTGGAGGACAGCGTGGATCGGCTTCTGAGGACCATGCCGCAAGCCGATCAGACTGAGGTCAAGACGCTTTTGAGACTCAATAAGAAAATGGCCAAGACCGTGGGACACATTTTCAACCTGGAAGCTCAGGACAAGAGCAAAGAGGAGGAGATCCGCAAATACAGCCTGATCTACGGACGCTTCGACTCCAAGAGGAGGGAAGGGAAACAGCTCACACACCATGAGATGCTCATCAACGAGGCGGCAGCTCAGTTCTGCATTCGAGACAATGCTCTGTTATTGCGCAGAGTCGAACTCTTCTCACTAGCGCGACAAGTGGCCAGAGAATGTGCCTACACGTCTACATTTAAACACCACAGGACGTACTCAGAGGATTGTTCTGCCTCCGCCGAGTGTGCCGCTCAGAAGAGGATCAAGCTTGAtGTCACAGATTCTGACAGACTGTCGAAGGATCCAGCGGTCAACAGTGACGTCAGATCTACAGCAGACGACAACAGTCTTTCTGGAGAGAGTCTGGACAGTTTAACACAAGATCTGAGTCCTCAGTGTCAGGCGTCCTCGTCCCCTCACCCCCTCCCCGAAACCAGCCTCATCACCTGGAGTCGGACGCTCATGCAACAGACACTCATGGATGAGGGCCTCAGATTGGCTAGAATGGTGTCACGTGACCACGCCAGCAGAGTCAGCCTAGGGTCAGAAAAGAGACAGATTTCAGAGATGGAGGAGAGGGCATCCGAGAGGAGAAGTCTGAGTACCAGAAGCAGCAGTCCAGCAAACACCAAAGATGATCCATGAGAACCAGCAGTCCTTCAGTCCCCATGACGATCTCAGGTCTCTccaagccgtgtgtgtgtgtgttcacttcaCTGTTCATCATGCCAGGGTAAAGCTGCAGTCAAAGAATAACAATGGAAATCTGCATTTGTTTGATGTGCTTTAAGGTAATTGATGATGGTTTATCATccattaaaggaacactccaatGTACTGCCacattacaaggtttttgtagcgaaAAGTACAACACCGACCCAGACAATGCAGCACTTTAAaccaataaaaatgttaataaaagtc

Function

symbol description
nab2 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human NAB2 (NGFI-A binding protein 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-080204-105 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human NAB2 (NGFI-A binding protein 2).

Ensembl:

ensembl_id ENSDARG00000078076

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007361 True 2278 mRNA 0.50 7 2571486 2594045

Neighbor

gene id symbol gene type direction distance location
XLOC_003831 cnpy2 coding downstream 22346 2540139 ~ 2549140 (-)
XLOC_003830 dgkab coding downstream 66736 2480293 ~ 2504750 (-)
XLOC_003829 si:ch73-267c23.10 coding downstream 93112 2471382 ~ 2478374 (-)
XLOC_003828 SERINC3 coding downstream 101957 2464543 ~ 2469529 (-)
XLOC_003827 slc2a10 coding downstream 114700 2448781 ~ 2456786 (-)
XLOC_003833 si:ch211-160o17.2 coding upstream 22771 2616816 ~ 2632747 (-)
XLOC_003834 si:ch211-160o17.6 coding upstream 97198 2691243 ~ 2700397 (-)
XLOC_003835 NA coding upstream 162848 2756893 ~ 2760366 (-)
XLOC_003836 lhfpl5a coding upstream 235767 2829812 ~ 2838699 (-)
XLOC_003837 NA coding upstream 248053 2842098 ~ 2843883 (-)
XLOC_003938 BX324177.10 misc upstream 8744759 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 8773549 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 8776410 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 8786859 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 8789788 11383833 ~ 11384130 (-)
XLOC_003826 NA non-coding downstream 122972 2446641 ~ 2448514 (-)
XLOC_003825 NA non-coding downstream 255273 2315496 ~ 2316213 (-)
XLOC_003821 NA non-coding downstream 349046 2211065 ~ 2222440 (-)
XLOC_003817 NA non-coding downstream 650965 1915963 ~ 1920521 (-)
XLOC_003816 NA non-coding downstream 656032 1911551 ~ 1915454 (-)
XLOC_003838 NA non-coding upstream 382558 2976603 ~ 2982382 (-)
XLOC_003843 NA non-coding upstream 791059 3385104 ~ 3494964 (-)
XLOC_003853 CR450797.1 non-coding upstream 1359678 3953723 ~ 3953837 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01091420_00005661_00006569 NAB2 coding CI01091420 null 5625 ~ 6720 (+)