XLOC_003837


Basic Information

Item Value
gene id XLOC_003837
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2842098 ~ 2843883 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008443
CTTATGATCTCTGCTCACACCTGATTTAATAATAGACATCAGCAGTCTGGATCTCGGGAAAATGGGACCCAAAAACACGCAGGGTTAAATGGCTGCAGAATACGGCTGCTGAAGTGCAGCGCTCATTACTGTTGCCGCTtgatgtcggcggacttgagacgatGAGAGGAGTTGACaacgacgaccgggttcgagtccggggaagagtggttccagaaatcaggtaagacaaaaacagaatccaaaaaaataaaatgatcgagtgaacaaca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008443 True 272 lncRNA 0.47 2 2842098 2843883

Neighbor

gene id symbol gene type direction distance location
XLOC_003836 lhfpl5a coding downstream 3399 2829812 ~ 2838699 (-)
XLOC_003835 NA coding downstream 81732 2756893 ~ 2760366 (-)
XLOC_003834 si:ch211-160o17.6 coding downstream 141701 2691243 ~ 2700397 (-)
XLOC_003833 si:ch211-160o17.2 coding downstream 209351 2616816 ~ 2632747 (-)
XLOC_003832 nab2 coding downstream 248053 2571486 ~ 2594045 (-)
XLOC_003838 NA coding upstream 132720 2976603 ~ 2982382 (-)
XLOC_003839 cdk2 coding upstream 457394 3301277 ~ 3308569 (-)
XLOC_003840 prph coding upstream 476715 3320598 ~ 3334250 (-)
XLOC_003841 tuba2 coding upstream 492641 3336524 ~ 3343463 (-)
XLOC_003842 suox coding upstream 501522 3345405 ~ 3381343 (-)
XLOC_003938 BX324177.10 misc upstream 8494921 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 8523711 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 8526572 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 8537021 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 8539950 11383833 ~ 11384130 (-)
XLOC_003826 NA non-coding downstream 393584 2446641 ~ 2448514 (-)
XLOC_003825 NA non-coding downstream 525885 2315496 ~ 2316213 (-)
XLOC_003821 NA non-coding downstream 619658 2211065 ~ 2222440 (-)
XLOC_003817 NA non-coding downstream 921577 1915963 ~ 1920521 (-)
XLOC_003843 NA non-coding upstream 541221 3385104 ~ 3494964 (-)
XLOC_003853 CR450797.1 non-coding upstream 1109840 3953723 ~ 3953837 (-)
XLOC_003858 BX248331.2 non-coding upstream 1343139 4187022 ~ 4194697 (-)
XLOC_003860 NA non-coding upstream 1420165 4264048 ~ 4281694 (-)

Expression


Co-expression Network