XLOC_003825


Basic Information

Item Value
gene id XLOC_003825
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2315496 ~ 2316213 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008735
aatcgcttcaaaagcaacagatttacttacttttttcaAGTAAAGCAAACTAATTGCTTCGTACAGTGTatcttttaaatatcttttaaagtGTGGAGCCACTTGAGGTAAAGTACATTTTAGAGTTCTTTtggggtgaactagccctttaaaaagcattaaagtgaCTTAGCAAATCTTGCTTATCTTAAAAGTAAGTTACAAACACGATTATTCTagtataaaatgtcatttaaaattaaaccgtgtattgtgaaatattaatcgTGTCATTTTTTAACAGCTTGTACTTATTAACAACTCTGGAGCTctgcctttttttctgatttcACTCAATCTGTGTGATAATTCACTTGATGATGGCCATTTGTTGTGTCTTTAGATTATCTCTGAGTCATCAAGAATAAAAGATTCTCCTGAAAAAGACAATCGGCACACTTAGTTCAGCCTTCATTGCTGTGTTTGTTTCTGAAGTACACTGAAATAAAGTGATTCATTGggtttatgaattttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008735 True 514 lncRNA 0.32 2 2315496 2316213

Neighbor

gene id symbol gene type direction distance location
XLOC_003823 znf740a coding downstream 17664 2252983 ~ 2297832 (-)
XLOC_003824 znf740a coding downstream 38415 2276354 ~ 2277081 (-)
XLOC_003822 hnrnpa1a coding downstream 64729 2240075 ~ 2250767 (-)
XLOC_003821 NA coding downstream 93056 2211065 ~ 2222440 (-)
XLOC_003820 calcoco1b coding downstream 184216 2111582 ~ 2131280 (-)
XLOC_003826 NA coding upstream 130428 2446641 ~ 2448514 (-)
XLOC_003827 slc2a10 coding upstream 132568 2448781 ~ 2456786 (-)
XLOC_003828 SERINC3 coding upstream 148330 2464543 ~ 2469529 (-)
XLOC_003829 si:ch73-267c23.10 coding upstream 155169 2471382 ~ 2478374 (-)
XLOC_003830 dgkab coding upstream 164080 2480293 ~ 2504750 (-)
XLOC_003938 BX324177.10 misc upstream 9022591 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 9051381 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 9054242 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 9064691 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 9067620 11383833 ~ 11384130 (-)
XLOC_003817 NA non-coding downstream 394975 1915963 ~ 1920521 (-)
XLOC_003816 NA non-coding downstream 400042 1911551 ~ 1915454 (-)
XLOC_003815 NA non-coding downstream 447571 1854431 ~ 1867925 (-)
XLOC_003814 NA non-coding downstream 710209 1603728 ~ 1605287 (-)
XLOC_003835 NA non-coding upstream 440680 2756893 ~ 2760366 (-)
XLOC_003837 NA non-coding upstream 525885 2842098 ~ 2843883 (-)
XLOC_003838 NA non-coding upstream 660390 2976603 ~ 2982382 (-)
XLOC_003843 NA non-coding upstream 1068891 3385104 ~ 3494964 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G178956 NA non-coding NW_025047901.1 JAEQBD010000246.1 194282 ~ 194540 (+)