XLOC_003822 (hnrnpa1a)


Basic Information

Item Value
gene id XLOC_003822
gene name hnrnpa1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2240075 ~ 2250767 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007350
ATGTCCAAAGAGCAACAGACCCCTCGTGAGCCCGAGCAGCTCCGAAAGCTGTTCATCGGGGGCCTCAGTTTCGAGACGACAGATGAGAGTCTGAGGGCCCATTTCGAGCAATGGGGAACCCTCACAGACTGTGTGGTGATGAGGGACCCCAACACAAAGAGGTCGAGGGGATTTGGCTTTGTCACCTACAGTTCAGTGGGTGAAGTAGACGCAGCGATGGACGCACGTCCCCACAAAGTCGACGGACGGGCTGTTGAACCCAAGAGGGCCGTGTCTAGAGAAGACTCGTCCAAGCCAGGCGCTCACTCCACTGTTAAAAAGATGTTTGTGGGTGGAATCAAAGAGGACACGGATGAGGAACACTTGCGCGAGTACTTCGGCCAGTTTGGTAAGATTGACGAGGTGAACATCATGACTGAGAAGAACAGCGATAAGAGGAGGGGCTTCGCCTTCATCACCTTCGATGACCACGATGCCGTCGACAGGATTGTCATTCAGAAGTACCACACGGTGAACGGCCACAACTGTGAAGTCAGGAAAGCTCTGTCTAGAGAGGAGATGAATAGAGTGTCCATGAATTCACGAGGAGGCCGAGGAGGCGGTGGTGGCAGCGGCGGTGGAAACTTTGgtagaggaggaggaggtggtggtggtggaggaTACGGAGgtgGATATGGAGGAGGTGGTGGAAGAGGAGGCGGTGGAGGATACGGTGGAGGCGATGGATATAACGGCTATGGTGGAGGAAATGGCGGCTATGGAGGAGGCGGCCCTAATTATGGTGGTAACCGTGGTTACGGCAGTGGTGGGGGTGGAGGCGGCGGCGGTGGCTATGGAAACCAGGGTGGTGGCTATGGTGGCGGCGGCTATGATAACTACAACAACAATGgtggtggtggaggaggaggaggcaaCTTTGGAGGAGGAAACTTCGGAGGTGGCGGAGACTACAATGACTTTGGAAACTACAATAATCAATCTTCCTCTAACTACGGCCCAATGAAGGGAGGAAACTATGGCGGCGGCGGAGGTGGTGGTGGAAGGAGCGGTGGTGGACCATATGGTGGTGGCTATGGAGGAGGCTCTGGAGGAGGCGGTGGTTATGGAGGAGgatctggtggtggtggtggaggaTATGGCGGAGGCTCTGGCGGACGGAGGTTTTAG

Function

symbol description
hnrnpa1a Enables mRNA 3'-UTR binding activity. Is expressed in gut; head; nervous system; and trunk. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 20; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3; and tropical spastic paraparesis. Orthologous to human HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1).

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1546 Enables mRNA 3'-UTR binding activity. Is expressed in gut; head; nervous system; and trunk. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 20; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3; and tropical spastic paraparesis. Orthologous to human HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1).

Ensembl:

ensembl_id ENSDARG00000011020

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007350 True 1167 mRNA 0.56 10 2240075 2250767

Neighbor

gene id symbol gene type direction distance location
XLOC_003821 NA coding downstream 17635 2211065 ~ 2222440 (-)
XLOC_003820 calcoco1b coding downstream 108795 2111582 ~ 2131280 (-)
XLOC_003819 nr1d4b coding downstream 272637 1944729 ~ 1967438 (-)
XLOC_003818 faim2b coding downstream 304192 1925804 ~ 1935883 (-)
XLOC_003817 NA coding downstream 319554 1915963 ~ 1920521 (-)
XLOC_003823 znf740a coding upstream 2216 2252983 ~ 2297832 (-)
XLOC_003824 znf740a coding upstream 25587 2276354 ~ 2277081 (-)
XLOC_003825 NA coding upstream 64729 2315496 ~ 2316213 (-)
XLOC_003826 NA coding upstream 195874 2446641 ~ 2448514 (-)
XLOC_003827 slc2a10 coding upstream 198014 2448781 ~ 2456786 (-)
XLOC_003938 BX324177.10 misc upstream 9088037 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 9116827 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 9119688 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 9130137 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 9133066 11383833 ~ 11384130 (-)
XLOC_003816 NA non-coding downstream 324621 1911551 ~ 1915454 (-)
XLOC_003815 NA non-coding downstream 372150 1854431 ~ 1867925 (-)
XLOC_003814 NA non-coding downstream 634788 1603728 ~ 1605287 (-)
XLOC_003835 NA non-coding upstream 506126 2756893 ~ 2760366 (-)
XLOC_003837 NA non-coding upstream 591331 2842098 ~ 2843883 (-)
XLOC_003838 NA non-coding upstream 725836 2976603 ~ 2982382 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_01219430_01223491 HNRNPA1, HNRNPA1A coding CI01000057 null 1219430 ~ 1223491 (-)