RNA id: TCONS_00007350


Basic Information

Item Value
RNA id TCONS_00007350
length 1167
RNA type mRNA
GC content 0.56
exon number 10
gene id XLOC_003822
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2240075 ~ 2250767 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCCAAAGAGCAACAGACCCCTCGTGAGCCCGAGCAGCTCCGAAAGCTGTTCATCGGGGGCCTCAGTTTCGAGACGACAGATGAGAGTCTGAGGGCCCATTTCGAGCAATGGGGAACCCTCACAGACTGTGTGGTGATGAGGGACCCCAACACAAAGAGGTCGAGGGGATTTGGCTTTGTCACCTACAGTTCAGTGGGTGAAGTAGACGCAGCGATGGACGCACGTCCCCACAAAGTCGACGGACGGGCTGTTGAACCCAAGAGGGCCGTGTCTAGAGAAGACTCGTCCAAGCCAGGCGCTCACTCCACTGTTAAAAAGATGTTTGTGGGTGGAATCAAAGAGGACACGGATGAGGAACACTTGCGCGAGTACTTCGGCCAGTTTGGTAAGATTGACGAGGTGAACATCATGACTGAGAAGAACAGCGATAAGAGGAGGGGCTTCGCCTTCATCACCTTCGATGACCACGATGCCGTCGACAGGATTGTCATTCAGAAGTACCACACGGTGAACGGCCACAACTGTGAAGTCAGGAAAGCTCTGTCTAGAGAGGAGATGAATAGAGTGTCCATGAATTCACGAGGAGGCCGAGGAGGCGGTGGTGGCAGCGGCGGTGGAAACTTTGgtagaggaggaggaggtggtggtggtggaggaTACGGAGgtgGATATGGAGGAGGTGGTGGAAGAGGAGGCGGTGGAGGATACGGTGGAGGCGATGGATATAACGGCTATGGTGGAGGAAATGGCGGCTATGGAGGAGGCGGCCCTAATTATGGTGGTAACCGTGGTTACGGCAGTGGTGGGGGTGGAGGCGGCGGCGGTGGCTATGGAAACCAGGGTGGTGGCTATGGTGGCGGCGGCTATGATAACTACAACAACAATGgtggtggtggaggaggaggaggcaaCTTTGGAGGAGGAAACTTCGGAGGTGGCGGAGACTACAATGACTTTGGAAACTACAATAATCAATCTTCCTCTAACTACGGCCCAATGAAGGGAGGAAACTATGGCGGCGGCGGAGGTGGTGGTGGAAGGAGCGGTGGTGGACCATATGGTGGTGGCTATGGAGGAGGCTCTGGAGGAGGCGGTGGTTATGGAGGAGgatctggtggtggtggtggaggaTATGGCGGAGGCTCTGGCGGACGGAGGTTTTAG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1546 Enables mRNA 3'-UTR binding activity. Is expressed in gut; head; nervous system; and trunk. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 20; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3; and tropical spastic paraparesis. Orthologous to human HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1).

Ensembl:

ensembl_id ENSDART00000018131

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008441 lncRNA downstream 19812 2211065 ~ 2220263 (-) False XLOC_003821
TCONS_00008734 lncRNA downstream 319554 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008732 lncRNA downstream 324621 1911551 ~ 1915454 (-) False XLOC_003816
TCONS_00008733 lncRNA downstream 325345 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00008731 lncRNA downstream 372150 1854431 ~ 1867925 (-) True XLOC_003815
TCONS_00008735 lncRNA upstream 64729 2315496 ~ 2316213 (-) True XLOC_003825
TCONS_00008442 lncRNA upstream 195874 2446641 ~ 2448514 (-) True XLOC_003826
TCONS_00007363 lncRNA upstream 374265 2625032 ~ 2628137 (-) True XLOC_003833
TCONS_00008736 lncRNA upstream 506126 2756893 ~ 2760366 (-) True XLOC_003835
TCONS_00008443 lncRNA upstream 591331 2842098 ~ 2843883 (-) True XLOC_003837
TCONS_00007348 mRNA downstream 17635 2217413 ~ 2222440 (-) False XLOC_003821
TCONS_00007349 mRNA downstream 18916 2217904 ~ 2221159 (-) True XLOC_003821
TCONS_00007347 mRNA downstream 108795 2111582 ~ 2131280 (-) True XLOC_003820
TCONS_00007344 mRNA downstream 272637 1944729 ~ 1967438 (-) False XLOC_003819
TCONS_00007345 mRNA downstream 283871 1945055 ~ 1956204 (-) False XLOC_003819
TCONS_00007351 mRNA upstream 2216 2252983 ~ 2297832 (-) False XLOC_003823
TCONS_00007352 mRNA upstream 12694 2263461 ~ 2270069 (-) True XLOC_003823
TCONS_00007353 mRNA upstream 25587 2276354 ~ 2277081 (-) True XLOC_003824
TCONS_00007354 mRNA upstream 198014 2448781 ~ 2456656 (-) False XLOC_003827
TCONS_00007355 mRNA upstream 198014 2448781 ~ 2456786 (-) True XLOC_003827
TCONS_00007330 other downstream 1151560 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 1260327 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 1780145 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 1888374 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 1702956 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 3821193 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 3946509 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4529941 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 4693533 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_01219430_01223491.mRNA True 763 mRNA 0.51 6 CI01000057 1219430 ~ 1223491 (-)