RNA id: TCONS_00008736


Basic Information

Item Value
RNA id TCONS_00008736
length 921
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id XLOC_003835
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2756893 ~ 2760366 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAATAATTGCCTTTATTTCAGTATAGCAGTGGTTGTTCAAAGTTCACAGACCACATAACTTAAGAGTGACTGAAGTAAAACCAGTTCTACAATGATCTCTcttattcatgaaaaaaaaaaaacggatctCATGCGACAAAACCAAATATATAAACCAGGTTTAATGGATTCTGATTGACACGTGATTTTCCActgtgcataaaaacaaaacaaaaaacacccccaccccctcATATTTAACAAGACATGCTCAACACAGAAAATATTGCTGAATAAAATTAAGAGATATAATATACagtgaaaaaagaaaacactttaaaaatgatACAATAAGTTAGATGCCGGCTCTAGAAGAGTCGTCTAGTCTGGGCTGTTCAGAGTTTTGGCTCAGCTTAACTTTCAGGGCATTGAAATGAAGGTAAACTGTTTCATCGTGAACCATAATGCAACTGTCTTACTGTTAAAACCCCAATCCTCCATTTAAAGCATGGatggataataaataaatgagagtGAAAGAACGGGAAACTACGCTCTAGGACCAGCTTTTGAAGAACTCAGGAATAATCAGGCCGATTAAAAACAGCCAAAACATGTCCAAATCACAATTAACCTcatcaaaaaataaacatatagttGGGATTTACTGTTTTTGATTGagtaaagtaatttttttgattCTATAAAGGTCAGATCACAATTCcttccaaatttcaaataaaaatattataatttacagcatttttttttgggTTAATGGGTCAGAACAAGCAATATTTTCCTTTGTTGTGACTGAAAAATCTGTGTTTGGTCTGCCAAATGTGGCTTTTCTTAACTGTTCTCAAGTTAAACTATTGATATTGTgtcatataaatattaataagcatTTCTGGAAACTTTTCTAtttgaccaattgtca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007363 lncRNA downstream 128756 2625032 ~ 2628137 (-) True XLOC_003833
TCONS_00008442 lncRNA downstream 308379 2446641 ~ 2448514 (-) True XLOC_003826
TCONS_00008735 lncRNA downstream 440680 2315496 ~ 2316213 (-) True XLOC_003825
TCONS_00008441 lncRNA downstream 536630 2211065 ~ 2220263 (-) False XLOC_003821
TCONS_00008734 lncRNA downstream 836372 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008443 lncRNA upstream 81732 2842098 ~ 2843883 (-) True XLOC_003837
TCONS_00008737 lncRNA upstream 216237 2976603 ~ 2982381 (-) False XLOC_003838
TCONS_00008738 lncRNA upstream 216237 2976603 ~ 2982382 (-) True XLOC_003838
TCONS_00007368 lncRNA upstream 544185 3304551 ~ 3308462 (-) True XLOC_003839
TCONS_00007372 lncRNA upstream 579933 3340299 ~ 3341687 (-) True XLOC_003841
TCONS_00007364 mRNA downstream 56496 2691243 ~ 2700397 (-) True XLOC_003834
TCONS_00007362 mRNA downstream 124146 2616816 ~ 2632747 (-) False XLOC_003833
TCONS_00007361 mRNA downstream 162848 2571486 ~ 2594045 (-) True XLOC_003832
TCONS_00007360 mRNA downstream 207753 2540139 ~ 2549140 (-) False XLOC_003831
TCONS_00007359 mRNA downstream 207753 2540139 ~ 2549140 (-) True XLOC_003831
TCONS_00007365 mRNA upstream 69446 2829812 ~ 2838699 (-) False XLOC_003836
TCONS_00007366 mRNA upstream 72385 2832751 ~ 2837156 (-) True XLOC_003836
TCONS_00007367 mRNA upstream 540911 3301277 ~ 3308569 (-) False XLOC_003839
TCONS_00007369 mRNA upstream 560232 3320598 ~ 3334248 (-) False XLOC_003840
TCONS_00007370 mRNA upstream 560757 3321123 ~ 3334250 (-) True XLOC_003840
TCONS_00007330 other downstream 1668378 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 1777145 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 2296963 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 2405192 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 1193357 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 3311594 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 3436910 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4020342 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 4183934 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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