XLOC_003884 (pole4)


Basic Information

Item Value
gene id XLOC_003884
gene name pole4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6197276 ~ 6206625 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007441
GTGTTTACAGTCAGATTTGGCGGGAGAGGATTAGATTATCTGCTTTCGGTTCACAGCAGCGCGTTCGGTTGAGAGTTTTTGTGCGTCGATGGCGGCGACCGCGTCTGCAGCTCCCGCGGAATCGGAGTTGGACCGCAGCGGGGCTGAAGAAGAGCCCCGGGGCACCGAGCCGGAGGAAGACGCGGGGAGCGGGCAAACCGGGCCCACCGCGGGCGCACAGCAACACCGGCTCGCCAGGCTTCCGCTGTCCCGCATTAAAACCCTGATGAAAGCAGATCCGGATGTGACTCTGGCGAGTCAAGAGTCCGTGTTCATCATAGCTAAAGCTACGGAGCTTTTTGTTGAAATGATTGCGAAGGACGCTCTCGTTTATGCACAACAGGGAAAGAGAAAAACCCTTCAACGCAAGGACTTGGatttctttaGTTCCGTCTTAAAGGCATagttaaaatgaaaaattaaaatACAATGCTATTGAAGCAATAGAcgaatttgcatttttggaagGTACATTGGACTGACCGAGAAGATGCTTAAATATCAATTAAAAGACTGTCAGCAAGTTCTGAAACTCCATTTCAGAAACTTTGAAAAAATGGTGGCAAAATGGCCGAATTTTTGAGTTTGATACATTTGTATAGTTGTCAAAGTTGTAAAGTTGTaaaattgtcaattttttttctctattttatgATTCTTATGACTGTGTAGTGTTTAAATAAACTGAAGTTATTTTATGTTAT
>TCONS_00007442
TGCAGTGACGTGGTTTCCGCCGTCCTCCTCTAGGTTGTGTTTACAGTCAGATTTGGCGGGAGAGGATTAGATTATCTGCTTTCGGTTCACAGCAGCGCGTTCGGTTGAGAGTTTTTGTGCGTCGATGGCGGCGACCGCGTCTGCAGCTCCCGCGGAATCGGAGTTGGACCGCAGCGGGGCTGAAGAAGAGCCCCGGGGCACCGAGCCGGAGGAAGACGCGGGGAGCGGGCAAACCGGGCCCACCGCGGGCGCACAGCAACACCGGCTCGCCAGGCTTCCGCTGTCCCGCATTAAAACCCTGATGAAAGCAGATCCGGATGTGACTCTGGCGAGTCAAGAGTCCGTGTTCATCATAGCTAAAGCTACGGAGCTTTTTGTTGAAATGATTGCGAAGGACGCTCTCGTTTATGCACAACAGGGAAAGAGAAAAACCCTTCAACGCAAGGACTTGGACAATGCTATTGAAGCAATAGAcgaatttgcatttttggaagGTACATTGGACTGACCGAGAAGATGCTTAAATATCAATTAAAAGACTGTCAGCAAGTTCTGAAACTCCATTTCAGAAACTTTGAAAAAATGGTGGCAAAATGGCCGAATTTTTGAGTTTGATACATTTGTATAGTTGTCAAAGTTGTAAAGTTGTaaaattgtcaattttttttctctattttatgATTCTTATGACTGTGTAGTGTTTAAATAAACTGAAGTTATTTTATGTTA
>TCONS_00007443
TGAGAGTTTTTGTGCGTCGATGGCGGCGACCGCGTCTGCAGCTCCCGCGGAATCGGAGTTGGACCGCAGCGGGGCTGAAGAAGAGCCCCGGGGCACCGAGCCGGAGGAAGACGCGGGGAGCGGGCAAACCGGGCCCACCGCGGGCGCACAGCAACACCGGCTCGCCAGGCTTCCGCTGTCCCGCATTAAAACCCTGATGAAAGCAGATCCGGATGTGACTCTGGCGAGTCAAGAGTCCGTGTTCATCATAGCTAAAGCTACGGAGCTTTTTGTTGAAATGATTGCGAAGGACGCTCTCGTTTATGCACAACAGGGAAAGAGAAAAACCCTTCAACGCAAGGACTTGGGTACATTGGACTGACCGAGAAGATGCTTAAATATCAATTAAAAGACTGTCAGCAAGTTCTGAAACTCCATTTCAGAAACTTTGAAAAAATGGTGGCAAAATGGCCGAATTTTTGAGTTTGATACATTTGTATAGTTGTCAAAGTTGTAAAGTTGTaaaattgtcaattttttttctctattttatgATTCTTATGACTGTGTA
>TCONS_00007444
TGCAGTGACGTGGTTTCCGCCGTCCTCCTCTAGGTTGTGTTTACAGTCAGATTTGGCGGGAGAGGATTAGATTATCTGCTTTCGGTTCACAGCAGCGCGTTCGGTTGAGAGTTTTTGTGCGTCGATGGCGGCGACCGCGTCTGCAGCTCCCGCGGAATCGGAGTTGGACCGCAGCGGGGCTGAAGAAGAGCCCCGGGGCACCGAGCCGGAGGAAGACGCGGGGAGCGGGCAAACCGGGCCCACCGCGGGCGCACAGCAACACCGGCTCGCCAGGCTTCCGCTGTCCCGCATTAAAACCCTGATGAAAGCAGATCCGGATGTGACTCTGGCGAGTCAAGAGTCCGTGTTCATCATAGCTAAAGCTACGGAGCTTTTTGTTGAAATGATTGCGAAGGACGCTCTCGTTTATGCACAACAGGGAAAGAGAAAAACCCTTCAACGCAAGGACTTGGACAATGCTATTGAAGCAATAGAcgaatttgcatttttggaagGTAAGAGATTTAATGTTATTTCCTGCTGGCAAAGCTCTAAAGGAGCGGGAGAAAGTTTTATGGTTCATTCTGATTTCCTATATTTCGTTACTCCCTTCAAAGCCTCGTTTTCCAGGAATGTCgaacttaaaaacaaaagaaattctGCCACGGTGTCTGGCTATGTGTGACCTAGCAGAACTTCAATTCTAGGAATTCAGAAACTTAAGACAGCTGGTTAAAACATGAATGTTTCATAAAAGGCGGTCGGCTTTGGTGTTGagagttttatttgtttgctttggtTGTGAATGACCATTAGTAACTCAGACTGAATCTACTGTATCTGTCCTAAATCCTAAAAACgtttttttcattagtttttgactcttctaaatgatgaaaataccaaaataaatgagaaaatatttaacaattatgcTAAGTTAacatttgtttatctgaaaagcaatgctaaagtcagttattatgttttgaaaatctgcgttctgtctttgttttgctctctaaccagcccactgccagattacccaattatattttagcactgCCTTGCTGGAAAACATACTATTTCCACTcaaccatctttcggatgagacgttaaactctctgtggtcatttaaaatcccatggcaaTACTCGTTAGGAGTAGGGTTGTAaccagggccggcccgtggcataggcagtataggcaaatgctaagggcgctgtacattcAGGGgagcgccagaaatgagcgcggctaggttggttttgttttcgatatttctgacacattcagtgatagatggcaataactcaaaaacctcttagcctaaaaagatttaaagtgtgtttcctacaaaaagtcaaagctggttatgtttcacagctgtctttttctctttttctctcgaCTTTACGAGCACTGCTCGCAATATGCGTTCAGCCGAGAGAGCTTGCGctgagctctcagtaagggaccgtctaaaaaagtgcctctttttgtttttgttttttgctccactcagcgcgagctctgtgaaacataaccagctttgtctttgtgtaataaacacactttagatctttttaggctTGGAAGTGTTTGAGTttttgccgtctatcactgaatgtgtcaggaatattgaaaaAAGTTAACGATACTTTGGTGATTCAGGTGTGTGTTTAAACGgacaaatacacttaaaaatatgtaaacatgtccatcctgcgtgttttattttaaacaactaattttctcttgaatgagcacaaacagttactaaagtagtcgaatgcttttattatagatctgtgcattcttagtgacacctctgttatcaaacaaaacacgagagattcatttgctgctcttcactaaataactgtagtaactttaatcaaaatgcaaatacaattaaaagtgaattAGATTTtctagctttatttaatttctgtataggccattgattttaataggctaaaccttttattttattattaaaattttgtaatgtttgctatgtattctatcatttgataACCCATAATAGTTGATGGAAACGCAATGATGCAcgttttataaatatacaaaaatataagcgcaaaactgagtaggataaactttttattcgataagaaaagatgggAAAAGATGGTATTCTGCGATGGAAATGCTTTTACATAAccaattccagtatgcgcatttaaaaaaaa
>TCONS_00007445
GATTATCTGCTTTCGGTTCACAGCAGCGCGTTCGGTTGAGAGTTTTTGTGCGTCGATGGCGGCGACCGCGTCTGCAGCTCCCGCGGAATCGGAGTTGGACCGCAGCGGGGCTGAAGAAGAGCCCCGGGGCACCGAGCCGGAGGAAGACGCGGGGAGCGGGCAAACCGGGCCCACCGCGGGCGCACAGCAACACCGGCTCGCCAGGCTTCCGCTGTCCCGCATTAAAACCCTGATGAAAGCAGATCCGGATGTGACTCTGGCGAGTCAAGAGTCCGTGTTCATCATAGCTAAAGCTACGGAGCTTTTTGTTGAAATGATTGCGAAGGACGCTCTCGTTTATGCACAACAGGGAAAGAGAAAAACCCTTCAACGCAAGGACTTGGatttctttaGTTCCGTCTTAAAGGCATagttaaaatgaaaaattaaaatgtactcactgtttactctccctcaagttgttccaaacctttatgagtatgTCTCCGTTAGAAAATCTCTCCGAGGAGAATTACTGCTGATCACAAATCTGCGGCTTTTCTATTAAAGGGacaattcacc

Function

symbol description
pole4 Predicted to enable protein heterodimerization activity. Predicted to be part of epsilon DNA polymerase complex. Predicted to be active in nucleus. Orthologous to human POLE4 (DNA polymerase epsilon 4, accessory subunit).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008622 epsilon DNA polymerase complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03030 DNA replication
ko03410 Base excision repair
ko03420 Nucleotide excision repair
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-050522-309 Predicted to enable protein heterodimerization activity. Predicted to be part of epsilon DNA polymerase complex. Predicted to be active in nucleus. Orthologous to human POLE4 (DNA polymerase epsilon 4, accessory subunit).

Ensembl:

ensembl_id ENSDARG00000013016

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007441 False 743 nonsense_mediated_decay 0.45 5 6197276 6206589
TCONS_00007442 False 729 mRNA 0.47 4 6197277 6206625
TCONS_00007443 False 550 mRNA 0.49 3 6197309 6206520
TCONS_00007444 False 2192 mRNA 0.40 3 6198100 6206625
TCONS_00007445 True 561 lncRNA 0.51 3 6204570 6206556

Neighbor

gene id symbol gene type direction distance location
XLOC_003883 ccl44 coding downstream 8863 6182680 ~ 6188413 (-)
XLOC_003882 NA coding downstream 100910 6086300 ~ 6096366 (-)
XLOC_003881 CT573239.1 coding downstream 125210 6071960 ~ 6072066 (-)
XLOC_003880 babam1 coding downstream 127084 6051287 ~ 6070192 (-)
XLOC_003879 plvapb coding downstream 148786 6043742 ~ 6048490 (-)
XLOC_003885 ccl25b coding upstream 52423 6259048 ~ 6265723 (-)
XLOC_003886 NA coding upstream 70275 6276900 ~ 6278698 (-)
XLOC_003887 NA coding upstream 110029 6316654 ~ 6324557 (-)
XLOC_003888 nrtn coding upstream 142818 6349443 ~ 6386572 (-)
XLOC_003889 ndufa11 coding upstream 204544 6411169 ~ 6429705 (-)
XLOC_003938 BX324177.10 misc upstream 5132179 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 5160969 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 5163830 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 5174279 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 5177208 11383833 ~ 11384130 (-)
XLOC_003878 NA non-coding downstream 190535 6005807 ~ 6006741 (-)
XLOC_003876 NA non-coding downstream 232905 5957009 ~ 5964371 (-)
XLOC_003872 NA non-coding downstream 422374 5773096 ~ 5774902 (-)
XLOC_003891 NA non-coding upstream 223348 6429973 ~ 6431348 (-)
XLOC_003893 NA non-coding upstream 248409 6455034 ~ 6456300 (-)
XLOC_003894 BX936438.1 non-coding upstream 574083 6780708 ~ 6782076 (-)

Expression


Co-expression Network