RNA id: TCONS_00007442


Basic Information

Item Value
RNA id TCONS_00007442
length 729
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_003884
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6197276 ~ 6206625 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGTGACGTGGTTTCCGCCGTCCTCCTCTAGGTTGTGTTTACAGTCAGATTTGGCGGGAGAGGATTAGATTATCTGCTTTCGGTTCACAGCAGCGCGTTCGGTTGAGAGTTTTTGTGCGTCGATGGCGGCGACCGCGTCTGCAGCTCCCGCGGAATCGGAGTTGGACCGCAGCGGGGCTGAAGAAGAGCCCCGGGGCACCGAGCCGGAGGAAGACGCGGGGAGCGGGCAAACCGGGCCCACCGCGGGCGCACAGCAACACCGGCTCGCCAGGCTTCCGCTGTCCCGCATTAAAACCCTGATGAAAGCAGATCCGGATGTGACTCTGGCGAGTCAAGAGTCCGTGTTCATCATAGCTAAAGCTACGGAGCTTTTTGTTGAAATGATTGCGAAGGACGCTCTCGTTTATGCACAACAGGGAAAGAGAAAAACCCTTCAACGCAAGGACTTGGACAATGCTATTGAAGCAATAGAcgaatttgcatttttggaagGTACATTGGACTGACCGAGAAGATGCTTAAATATCAATTAAAAGACTGTCAGCAAGTTCTGAAACTCCATTTCAGAAACTTTGAAAAAATGGTGGCAAAATGGCCGAATTTTTGAGTTTGATACATTTGTATAGTTGTCAAAGTTGTAAAGTTGTaaaattgtcaattttttttctctattttatgATTCTTATGACTGTGTAGTGTTTAAATAAACTGAAGTTATTTTATGTTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008622 epsilon DNA polymerase complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03030 DNA replication
ko03410 Base excision repair
ko03420 Nucleotide excision repair
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-050522-309 Predicted to enable protein heterodimerization activity. Predicted to be part of epsilon DNA polymerase complex. Predicted to be active in nucleus. Orthologous to human POLE4 (DNA polymerase epsilon 4, accessory subunit).

Ensembl:

ensembl_id ENSDART00000148246

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007440 lncRNA downstream 8864 6187382 ~ 6188413 (-) True XLOC_003883
TCONS_00008749 lncRNA downstream 100911 6086300 ~ 6096366 (-) True XLOC_003882
TCONS_00007433 lncRNA downstream 148936 6047073 ~ 6048341 (-) True XLOC_003879
TCONS_00008449 lncRNA downstream 190536 6005807 ~ 6006741 (-) True XLOC_003878
TCONS_00008448 lncRNA downstream 232906 5957009 ~ 5964371 (-) True XLOC_003876
TCONS_00007448 lncRNA upstream 55068 6261693 ~ 6262709 (-) True XLOC_003885
TCONS_00008450 lncRNA upstream 70275 6276900 ~ 6278698 (-) True XLOC_003886
TCONS_00008750 lncRNA upstream 110029 6316654 ~ 6324557 (-) True XLOC_003887
TCONS_00008751 lncRNA upstream 223348 6429973 ~ 6431132 (-) False XLOC_003891
TCONS_00008752 lncRNA upstream 223348 6429973 ~ 6431348 (-) True XLOC_003891
TCONS_00007439 mRNA downstream 8864 6182680 ~ 6188413 (-) False XLOC_003883
TCONS_00007437 mRNA downstream 127085 6064033 ~ 6070192 (-) True XLOC_003880
TCONS_00007435 mRNA downstream 128196 6052031 ~ 6069081 (-) False XLOC_003880
TCONS_00007434 mRNA downstream 128852 6051287 ~ 6068425 (-) False XLOC_003880
TCONS_00007436 mRNA downstream 128902 6060535 ~ 6068375 (-) False XLOC_003880
TCONS_00007446 mRNA upstream 52423 6259048 ~ 6265574 (-) False XLOC_003885
TCONS_00007447 mRNA upstream 55057 6261682 ~ 6265723 (-) False XLOC_003885
TCONS_00007449 mRNA upstream 142818 6349443 ~ 6386572 (-) False XLOC_003888
TCONS_00007450 mRNA upstream 143405 6350030 ~ 6354568 (-) True XLOC_003888
TCONS_00007451 mRNA upstream 204544 6411169 ~ 6429705 (-) True XLOC_003889
TCONS_00007438 other downstream 125211 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 2243440 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 5108762 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 5217529 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 5737347 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007456 other upstream 574083 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 737675 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 909622 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 1904744 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 5118897 11325522 ~ 11331050 (-) False XLOC_003936

Expression Profile

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