Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007446 |
| length | 3370 |
| RNA type | mRNA |
| GC content | 0.32 |
| exon number | 3 |
| gene id | XLOC_003885 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 6259048 ~ 6265723 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043547 | positive regulation of GTPase activity | biological_process |
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:1902033 | regulation of hematopoietic stem cell proliferation | biological_process |
| GO:0002548 | monocyte chemotaxis | biological_process |
| GO:0006954 | inflammatory response | biological_process |
| GO:0006955 | immune response | biological_process |
| GO:2000471 | regulation of hematopoietic stem cell migration | biological_process |
| GO:0071346 | cellular response to interferon-gamma | biological_process |
| GO:0071347 | cellular response to interleukin-1 | biological_process |
| GO:0071356 | cellular response to tumor necrosis factor | biological_process |
| GO:0048247 | lymphocyte chemotaxis | biological_process |
| GO:0070098 | chemokine-mediated signaling pathway | biological_process |
| GO:0070374 | positive regulation of ERK1 and ERK2 cascade | biological_process |
| GO:0030593 | neutrophil chemotaxis | biological_process |
| GO:0097535 | lymphoid lineage cell migration into thymus | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0048020 | CCR chemokine receptor binding | molecular_function |
| GO:0008009 | chemokine activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110222-2 | Enables chemokine activity. Acts upstream of or within lymphoid lineage cell migration into thymus; regulation of hematopoietic stem cell migration; and regulation of hematopoietic stem cell proliferation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including blood vessel; head; hematopoietic system; immune system; and spinal cord. Orthologous to human CCL25 (C-C motif chemokine ligand 25). |
| ensembl_id | ENSDART00000181974 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00007445 | lncRNA | downstream | 52492 | 6204570 ~ 6206556 (-) | True | XLOC_003884 |
| TCONS_00007440 | lncRNA | downstream | 70635 | 6187382 ~ 6188413 (-) | True | XLOC_003883 |
| TCONS_00008749 | lncRNA | downstream | 162682 | 6086300 ~ 6096366 (-) | True | XLOC_003882 |
| TCONS_00007433 | lncRNA | downstream | 210707 | 6047073 ~ 6048341 (-) | True | XLOC_003879 |
| TCONS_00008449 | lncRNA | downstream | 252307 | 6005807 ~ 6006741 (-) | True | XLOC_003878 |
| TCONS_00008450 | lncRNA | upstream | 11326 | 6276900 ~ 6278698 (-) | True | XLOC_003886 |
| TCONS_00008750 | lncRNA | upstream | 51080 | 6316654 ~ 6324557 (-) | True | XLOC_003887 |
| TCONS_00008751 | lncRNA | upstream | 164399 | 6429973 ~ 6431132 (-) | False | XLOC_003891 |
| TCONS_00008752 | lncRNA | upstream | 164399 | 6429973 ~ 6431348 (-) | True | XLOC_003891 |
| TCONS_00008753 | lncRNA | upstream | 189460 | 6455034 ~ 6456300 (-) | True | XLOC_003893 |
| TCONS_00007442 | mRNA | downstream | 52423 | 6197277 ~ 6206625 (-) | False | XLOC_003884 |
| TCONS_00007444 | mRNA | downstream | 52423 | 6198100 ~ 6206625 (-) | False | XLOC_003884 |
| TCONS_00007443 | mRNA | downstream | 52528 | 6197309 ~ 6206520 (-) | False | XLOC_003884 |
| TCONS_00007439 | mRNA | downstream | 70635 | 6182680 ~ 6188413 (-) | False | XLOC_003883 |
| TCONS_00007437 | mRNA | downstream | 188856 | 6064033 ~ 6070192 (-) | True | XLOC_003880 |
| TCONS_00007449 | mRNA | upstream | 83869 | 6349443 ~ 6386572 (-) | False | XLOC_003888 |
| TCONS_00007450 | mRNA | upstream | 84456 | 6350030 ~ 6354568 (-) | True | XLOC_003888 |
| TCONS_00007451 | mRNA | upstream | 145595 | 6411169 ~ 6429705 (-) | True | XLOC_003889 |
| TCONS_00007452 | mRNA | upstream | 151876 | 6417450 ~ 6420917 (-) | True | XLOC_003890 |
| TCONS_00007453 | mRNA | upstream | 180661 | 6446235 ~ 6452492 (-) | False | XLOC_003892 |
| TCONS_00007441 | other | downstream | 52459 | 6197276 ~ 6206589 (-) | False | XLOC_003884 |
| TCONS_00007438 | other | downstream | 186982 | 6071960 ~ 6072066 (-) | True | XLOC_003881 |
| TCONS_00007400 | other | downstream | 2305211 | 3953723 ~ 3953837 (-) | True | XLOC_003853 |
| TCONS_00007330 | other | downstream | 5170533 | 1069406 ~ 1088515 (-) | False | XLOC_003806 |
| TCONS_00007326 | other | downstream | 5279300 | 923795 ~ 979748 (-) | True | XLOC_003803 |
| TCONS_00007456 | other | upstream | 515134 | 6780708 ~ 6782076 (-) | True | XLOC_003894 |
| TCONS_00007463 | other | upstream | 678726 | 6944300 ~ 6948018 (-) | False | XLOC_003898 |
| TCONS_00007477 | other | upstream | 850673 | 7116247 ~ 7116363 (-) | True | XLOC_003904 |
| TCONS_00007494 | other | upstream | 1845795 | 8111369 ~ 8126195 (-) | True | XLOC_003913 |
| TCONS_00007548 | other | upstream | 5059948 | 11325522 ~ 11331050 (-) | False | XLOC_003936 |
