XLOC_003892 (larp6b)


Basic Information

Item Value
gene id XLOC_003892
gene name larp6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6446235 ~ 6452492 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007453
ATCAGTATAGTAAACAGAATCACCTGTGCCCGGGTGATGTGTGGCGGTGCACGTGGAAGCAGACAGGGAAAACATCAGCATGTCCTCACCCGGTTTTACTGACATCTTCCATTGTGAAGACACCCAACAATCAAAGGGTCTGTTCTCATACACTGACGACGGACTAAATGATAGTTTGGATGGgagttCAACTGATTTGACCGATGTTTTTGAGGAGGATTTCTGTGAGGGTGAGCTATGGATTCCTCCAAACGATGATGTGACGCAGCAAATTGCCACCCAGCTTGAGAACTACCTTTCTGATGAGAACCTATCAGATGATGCTTTTCTCCTAAAACACGTCCAGAGAAACAAGATGGGTTACGTTAGTTTAAAGCTGCTGACATCTTTCAAAAAGATTCGAGATCTCACACGTGACTGGCGCACAACACTGGCGGCAGCAAGAACCTCTCTGCAGCTGGAAGTGAATGAGATGGGAACCAAGGTGCGACGACGGACTCCAGTACCCGATTGGCTCTTATGCATTCCCACAAGCAAGCTGCTCTTGGCCTGGAACTTTCTAGATGGCGCTGGTCCAGTCAAGGAGAAGTTCGAGTCACCTGGTGTGGAGCAGCTAGGCATCATGGAAGCCGCAATGCGTGTGTTTTCCCCTTACGGCACCATTTCATCCCTTCGCATTCTGCGCCCTGGAAAAGAAATCCCTGCAGAGTTGAAACGCTACACTAAGAAACACCTGGAACTGGGGCGCAAAGTATGTGCTGTGGTGGAGTACGAGTATCTGGAGGGCGCTCGCAAAGCTTTTGAAGCCCTGAAGGTGGAAGAGCAGCAGGGAGGTCGGGGCATTTGTGTGGTCCTGCTGGGCAGCCGTGGAACCCGTAAGCCCGGATGCAGCCAAGGCCTAGTGGACGAGGAGCAAGAAGACTGCATCGACATCGATGTTTTGAAAAGACCCGACAGAAAGGCCAGGCAGTTTGTTTATTCTCTGGAGGATTCAGCTGTTTGCAGCTCTTCAGAGTCTGATTTTGCCCCTGCCTCACCCCGACCCAACCGCAGGGTCTCCCGCCCTCAAGCCCTCTACGGCAGTCCTCTCGCCATCCCGCGGGTATCCACATTCCGCTCTGACCCTTACAGGAATCCTCTTGGCAGTCCTGTTGGAAGCCCGCTCCAGCCTCGTAAGCTTTTTCCTTGCAGTCATGTGACATCTCCTCTGGCTACGCATCCTTTCAGCAGCACGCCGAGTGGAGCTGGCACGTCCTTCAAGTACAAGGCCTCAGGTGAGCTCTCCCCAGATGATCTGGGCTTCACAAGCAGCCCGTGGGTTCAGAGACGTAAAAATGCAGCTCAAGTCATTCAGCCTGAGATGGCCAGCTCGATGTCACCCAGTCAGCTAATCAAGTCTTTAAGTGTGCTGGTTGTGCGTCAGCCTGTCGGCCCCGATGGGACCAAAGGTTTCCACAACTGCATCGGTCGAGGGAAGGTGCTGCTACCCCAATGACCCTGTTAAACATCCACTTAGAAGAAATGGTATGAGCCTTTGTGCAGTGCAGCAGAAGCACTTTTAATGCAACATAATCAGTCATGTTCTCCTATTCATGAAAAAGGAGATaagtaatgttaaaaaaaaaatgtctaattaaatgttaaataaagatgaatttgtACTCCAA
>TCONS_00007454
CTGTGCCCGGGTGATGTGTGGCGGTGCACGTGGAAGCAGACAGGGAAAACATCAGgagttCAACTGATTTGACCGATGTTTTTGAGGAGGATTTCTGTGAGGGTGAGCTATGGATTCCTCCAAACGATGATGTGACGCAGCAAATTGCCACCCAGCTTGAGAACTACCTTTCTGATGAGAACCTATCAGATGATGCTTTTCTCCTAAAACACGTCCAGAGAAACAAGATGGGTTACGTTAGTTTAAAGCTGCTGACATCTTTCAAAAAGATTCGAGATCTCACACGTGACTGGCGCACAACACTGGCGGCAGCAAGAACCTCTCTGCAGCTGGAAGTGAATGAGATGGGAACCAAGGTGCGACGACGGACTCCAGTACCCGATTGGCTCTTATGCATTCCCACAAGCAAGCTGCTCTTGGCCTGGAACTTTCTAGATGGCGCTGGTCCAGTCAAGGAGAAGTTCGAGTCACCTGGTGTGGAGCAGCTAGGCATCATGGAAGCCGCAATGCGTGTGTTTTCCCCTTACGGCACCATTTCATCCCTTCGCATTCTGCGCCCTGGAAAAGAAATCCCTGCAGAGTTGAAACGCTACACTAAGAAACACCTGGAACTGGGGCGCAAAGTATGTGCTGTGGTGGAGTACGAGTATCTGGAGGGCGCTCGCAAAGCTTTTGAAGCCCTGAAGGTGGAAGAGCAGCAGGGAGGTCGGGGCATTTGTGTGGTCCTGCTGGGCAGCCGTGGAACCCGTAAGCCCGGATGCAGCCAAGGCCTAGTGGACGAGGAGCAAGAAGACTGCATCGACATCGATGTTTTGAAAAGACCCGACAGAAAGGCCAGGCAGTTTGTTT
>TCONS_00007455
GCACGTGGAAGCAGACAGGGAAAACATCAGGTATCCTGTTTACACTGCAGTTTATCTAgataattataaaagttttaTGATATAAAGGCAACTTTAGTACtagtaaaactaaataataataataatttgtcaacAGCATGTCCTCACCCGGTTTTACTGACATCTTCCATTGTGAAGACACCCAACAATCAAAGGGTCTGTTCTCATACACTGACGACGGACTAAATGATAGTTTGGATGGgagttCAACTGATTTGACCGATGTTTTTGAGGAGGATTTCTGTGAGGGTGAGCTATGGATTCCTCCAAACGATGATGTGACGCAGCAAATTGCCACCCAGCTTGAGAACTACCTTTCTGATGAGAACCTATCAGATGATGCTTTTCTCCTAAAACACGTCCAGAGAAACAAGATGGGTTACGTTAGTTTAAAGCTGCTGACATCTTTCAAAAAGATTCGAGATCTCACACGTGACTGGCGCACAACACTGGCGGCAGCAAGAACCTCTCTGCAGCTGGAAGTGAATGAGATGGGAACC

Function

symbol description
larp6b Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human LARP6 (La ribonucleoprotein 6, translational regulator).

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-244 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human LARP6 (La ribonucleoprotein 6, translational regulator).

Ensembl:

ensembl_id ENSDARG00000003968

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007453 False 1667 mRNA 0.51 4 6446235 6452492
TCONS_00007454 False 849 mRNA 0.52 3 6446925 6452469
TCONS_00007455 True 539 mRNA 0.42 3 6447421 6452444

Neighbor

gene id symbol gene type direction distance location
XLOC_003891 NA coding downstream 14887 6429973 ~ 6431348 (-)
XLOC_003889 ndufa11 coding downstream 16530 6411169 ~ 6429705 (-)
XLOC_003890 VMAC coding downstream 25318 6417450 ~ 6420917 (-)
XLOC_003888 nrtn coding downstream 59663 6349443 ~ 6386572 (-)
XLOC_003887 NA coding downstream 121678 6316654 ~ 6324557 (-)
XLOC_003893 NA coding upstream 2542 6455034 ~ 6456300 (-)
XLOC_003894 BX936438.1 coding upstream 328216 6780708 ~ 6782076 (-)
XLOC_003895 NA coding upstream 340054 6792546 ~ 6799938 (-)
XLOC_003896 lsm4 coding upstream 407384 6859876 ~ 6868474 (-)
XLOC_003897 ddx49 coding upstream 416820 6869312 ~ 6880725 (-)
XLOC_003938 BX324177.10 misc upstream 4886312 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 4915102 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 4917963 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 4928412 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 4931341 11383833 ~ 11384130 (-)
XLOC_003886 NA non-coding downstream 167537 6276900 ~ 6278698 (-)
XLOC_003882 NA non-coding downstream 349869 6086300 ~ 6096366 (-)
XLOC_003881 CT573239.1 non-coding downstream 374169 6071960 ~ 6072066 (-)
XLOC_003904 CR925817.2 non-coding upstream 663755 7116247 ~ 7116363 (-)
XLOC_003908 NA non-coding upstream 893308 7345800 ~ 7349497 (-)

Expression


Co-expression Network