XLOC_003889 (ndufa11)


Basic Information

Item Value
gene id XLOC_003889
gene name ndufa11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6411169 ~ 6429705 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007451
TCAGTCGTGTCCTTGATGCGCTAGCAGAGATGGGCTACTGGGATCTAGAAGAGGGCAAAGACTGCGTTGCCAAAACATGGGTCACCACGAAAGTGGCCACCGTTGTAGGACTGGTCGCTACTGCCTACCGTATGGTGTTATTTAAACCTGAACCCCCTCTTCAAGCTTTGACCTCAGCAGCATCACTCACTGGCACCATGGCTGCCATGGGTGCCATCTTTGGTATGACCACTTGTATAAGTGCACAGATCAGAGATGAACCTGACAGCCCAGCTAACTATTTCATTGGTGGATGTGCTTCAGGTGTATTCCTTGGTGCACGGACACACAGTCCTATGACAGGTACTATGGCTTGTGTTGGTCTGGGAACTGTGGCAATGCTAACAAAAGTTGGAAAAATGGAAGGCTGGAAACTCACAGGATCCCCAAAGCTGTGAACTGAGATGTACCCTAGTACTTGATTTGTTTATATTGTATACTgctcaaataaatgtatt

Function

symbol description
ndufa11 Predicted to act upstream of or within mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 14. Orthologous to human NDUFA11 (NADH:ubiquinone oxidoreductase subunit A11).

GO:

id name namespace
GO:0032981 mitochondrial respiratory chain complex I assembly biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-040426-1631 Predicted to act upstream of or within mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 14. Orthologous to human NDUFA11 (NADH:ubiquinone oxidoreductase subunit A11).

Ensembl:

ensembl_id ENSDARG00000042777

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007451 True 497 mRNA 0.47 4 6411169 6429705

Neighbor

gene id symbol gene type direction distance location
XLOC_003888 nrtn coding downstream 24597 6349443 ~ 6386572 (-)
XLOC_003887 NA coding downstream 86612 6316654 ~ 6324557 (-)
XLOC_003886 NA coding downstream 132471 6276900 ~ 6278698 (-)
XLOC_003885 ccl25b coding downstream 145446 6259048 ~ 6265723 (-)
XLOC_003884 pole4 coding downstream 204544 6197276 ~ 6206625 (-)
XLOC_003891 NA coding upstream 268 6429973 ~ 6431348 (-)
XLOC_003892 larp6b coding upstream 16530 6446235 ~ 6452492 (-)
XLOC_003893 NA coding upstream 25329 6455034 ~ 6456300 (-)
XLOC_003894 BX936438.1 coding upstream 351003 6780708 ~ 6782076 (-)
XLOC_003895 NA coding upstream 362841 6792546 ~ 6799938 (-)
XLOC_003938 BX324177.10 misc upstream 4909099 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 4937889 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 4940750 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 4951199 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 4954128 11383833 ~ 11384130 (-)
XLOC_003882 NA non-coding downstream 314803 6086300 ~ 6096366 (-)
XLOC_003881 CT573239.1 non-coding downstream 339103 6071960 ~ 6072066 (-)
XLOC_003878 NA non-coding downstream 404428 6005807 ~ 6006741 (-)
XLOC_003904 CR925817.2 non-coding upstream 686542 7116247 ~ 7116363 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_04195849_04198909 NDUFA11 coding CI01000057 null 4195795 ~ 4198909 (-)