XLOC_003888 (nrtn)


Basic Information

Item Value
gene id XLOC_003888
gene name nrtn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6349443 ~ 6386572 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007449
TGGAAACAAACACTCTGcttaattcagttcagttgtcAGAGCTGCTTCATTACGTGGCGCACCAGCAGGTAGCAGCTGCCAAAGGCTCCGATAATCCTCTGGCGTGGAAAGGATCAGGGAGAAGGTGGCGTCTACTTTCGGCGAGAAGGAGGAGGACACGTTGGACAGGTAGCTGATTTCTGGGATCGTAATCTCCATCTGTAATGAGGCATGGGGCAGATATCGCGTACTTGAAAACTGATGGAATACAGATTTGGAGAACTGCTCCTGTAGAAGAAAAGTCCTGGCTTCATGGCAACACTCTCTCAAAGATGGGATTTTGGCTTCTGTAAGGACTCGCAACTCGAGGCAACGCAGCTTCTCCTCACATTTATGAATCATTACAGAGGAATCTGTTGGATAAACATCTTTTTGAGGCTGTTTTGGAAGTGATTGCTGTGTATATAAAGGATGTGAGACAAGAACCTGCGCCGTAAACATTTAACGTGCGCACGAACAGCTGCTTTTCTTCAGATctacatatatgtatttttatgagTAATAGTTTGCGGGTGTTTTGAGTGACACATTGGTTGACGGATCCCTTAATTGctcgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaagtgtaACATTGGTGGAGAGAACAGCTAATGGGTTTCTATTCACCGAGCTCATTATTTAAGGGCTAGTTAGTCATCACAATACAGATTCCTTCTATGTCATGCTTCGTTTTATGGAAATAAGTTGGTAAAATATGACAATTCATGACTGATACTAAAGTAAAAATGTGATTCTGGAGGATTTTTGAGGACTGGCTTACTAAACACTCGATATTTGAGGCTGGTACAGTCTGTGAGAACATTCTCTTTCTTCAAACTTTGCACCGGTGTCAGAGCAGAATGAGgatatttggatatttttttcacCATCGCTGGATTTCCAGAGGATCCTGTGAATGAATATCCAAGATTtttcataaactttttttttcatcttaaaaaaGAATAAGAAAGGGCTGGAATATTGATCAGTACCAAGAGgtcagctgaacacacacactgtggAGTCTGGATAAGCCGTGCAGACGGGGCCCAATGCTTCTCCTCATTCTAAGATGAAGTTATGGAAGTTTGCTGCCATCGGCCTGATTCTCTGTGGTGCTGCACTCCTCCTGCTCGTCCTTAAAGTCACGCCCTCTTCCAGAGCCCCGCCTCTTCCTTCATCCTCATCAACTTCTCTTACAGTCAGTAATTCATCCTCTTCCATTGAGTTTGGTGGGCGACAACGGAGAACCAGATCAGCAGACGGAGAAAACTCTCTTGTCTCAGAATTCATGGAGATGTTCCAAAGCTTCACAGAGGGTGAGCTGAAGCAAGTCATCGGGACGCTGGTGGAAAGGAAAGCCCACAGAGATGCCCAGCTGAGCAAAAGGACTAAACGTGCAAAAAAGGGATCCAAACCCTGCTCGCTGCGGAAGCTGGTGGTGACAGTCAGCCAGCTTGGGATTGCCTTTGTCAGCGATGAGACCATAGCCTTCCATTACTGCAGTGGCGAATGCGACGCTAGCCGTAAAAACTACGACTTTGTCTTGGAAGCCATGAAGAAGAAGGGGCTGCTCCGAAAGAACAAGGCTCGCCACAGACCCTGCTGTCGGCCTACAGCGTATGAGGAGGACTTTCTTTTCCTTGATAACTCCTTTCAGTACAAGACCATCCACGAGTTCTCAGCTAAAGCGTGTGGATGTATCTGACATTGAGGATCTGAATACTAAGATGTTTTAAGACAAATGAAGAATATAGACCCTTGTTTCTGGGAAGGCTAAACATATGTCTTGCATTGCCTTCATTTATAAGACTTGGCTGACAAATTCTCCTCAGCTTCTGCCAGTCTTGATGAAGAGAAATGTATCAAGAAAATAGTAATTGTTCCCATGTCTTGTTGTTGATAATGAGATGCTGCTGTATATCTTGATTATAATTGCCTTCGTGGGtctattttaaatagtttgaaacgTTGGATGAATGCTGAGCGCAGAGTTTAAAAGTAGGAAACCTCTAGAAGATTCAATCTGGGCTTTAGCAAACAAAAGCAAAGGCACAGCAAATGAACAAAACTCTGTGTAAATAATCCCAGCATTTCCGCAAAGTTTCAGCTCTGAGCATTTGACTTCAAAGTTAAACAATCCCACAAATTAAgttcaaaatacctttttttttttttttactgacatcTACCTCAGCTTTGATAAACTCGGCATGGCTTTGTAAAAGAAAACCCAATATTATagcaagtattaaaaagtaataaatattctaaataaacaATGCTTATAAAGGA
>TCONS_00007450
cttgttttctcttattgtaaagcactttgtgacttaATGTCTGTGAAAGGTGCTTTATAACAAACCTTTTACTTACTTTACTGTACAGTTCTAGttgtttttggatattttttggggatgttttcatcttaCAAATTGTgtctttaaaacaatgttttttatatacacgTTGAACGATAGTTTCCAGTGACGCCTAGTCGTCTattgtatattaataaaaatcagCCATAATGTTTCTGGAGTTACTTGAGATGTCAAAATCTGATGTGACTGTTTGaggtgtatttttttcttcttcttttgagTGATGGCCGTTTGCTTGTTTTGCAGGGGCCCAATGCTTCTCCTCATTCTAAGATGAAGTTATGGAAGTTTGCTGCCATCGGCCTGATTCTCTGTGGTGCTGCACTCCTCCTGCTCGTCCTTAAAGTCACGCCCTCTTCCAGAGCCCCGCCTCTTCCTTCATCCTCATCAACTTCTCTTACAGTCAGTAATTCATCCTCTTCCATTGAGTTTGGTGGGCGACAACGGAGAACCAGATCAGCAGACGGAGAAAACTCTCTTGTCTCAGAATTCATGGAGATGTTCCAAAGCTTCACAGAGGGTGAGCTGAAGCAAGTCATCGGGACGCTGGTGGAAAGGAAAGCCCACAGAGATGCCCAGCTGAGCAAAAGGACTAAACGTGCAAAAAAGGGATCCAAACCCTGCTCGCTGCGGAAGCTGGTGGTGACAGTCAGCCAGCTTGGGATTGCCTTTGTCAGCGATGAGACCATAGCCTTCCATTACTGCAGTGGCGAATGCGACGCTAGCCGTAAAAACTACGACTTTGTCTTGGAAGCCATGAAGAAGAAGGGGCTGCTCCGAAAGAACAAGGCTCGCCACAGACCCTGCTGTCGGCCTACAGCGTATGAGGAGGACTTTCTTTTCCTTGATAACTCCTTTCAGTACAAGACCATCCACGAGTTCTCAGCTAAAGCGTGTGGATGTATCTGA

Function

symbol description
nrtn Predicted to enable glial cell-derived neurotrophic factor receptor binding activity; growth factor activity; and receptor tyrosine kinase binding activity. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in Hirschsprung's disease. Orthologous to human NRTN (neurturin).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100427-6 Predicted to enable glial cell-derived neurotrophic factor receptor binding activity; growth factor activity; and receptor tyrosine kinase binding activity. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in Hirschsprung's disease. Orthologous to human NRTN (neurturin).

Ensembl:

ensembl_id ENSDARG00000079849

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007449 False 2348 mRNA 0.43 3 6349443 6386572
TCONS_00007450 True 993 mRNA 0.45 2 6350030 6354568

Neighbor

gene id symbol gene type direction distance location
XLOC_003887 NA coding downstream 24886 6316654 ~ 6324557 (-)
XLOC_003886 NA coding downstream 70745 6276900 ~ 6278698 (-)
XLOC_003885 ccl25b coding downstream 83720 6259048 ~ 6265723 (-)
XLOC_003884 pole4 coding downstream 142818 6197276 ~ 6206625 (-)
XLOC_003883 ccl44 coding downstream 161030 6182680 ~ 6188413 (-)
XLOC_003889 ndufa11 coding upstream 24597 6411169 ~ 6429705 (-)
XLOC_003890 VMAC coding upstream 30878 6417450 ~ 6420917 (-)
XLOC_003891 NA coding upstream 43401 6429973 ~ 6431348 (-)
XLOC_003892 larp6b coding upstream 59663 6446235 ~ 6452492 (-)
XLOC_003893 NA coding upstream 68462 6455034 ~ 6456300 (-)
XLOC_003938 BX324177.10 misc upstream 4952232 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 4981022 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 4983883 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 4994332 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 4997261 11383833 ~ 11384130 (-)
XLOC_003882 NA non-coding downstream 253077 6086300 ~ 6096366 (-)
XLOC_003881 CT573239.1 non-coding downstream 277377 6071960 ~ 6072066 (-)
XLOC_003878 NA non-coding downstream 342702 6005807 ~ 6006741 (-)
XLOC_003894 BX936438.1 non-coding upstream 394136 6780708 ~ 6782076 (-)
XLOC_003895 NA non-coding upstream 405974 6792546 ~ 6799938 (-)
XLOC_003904 CR925817.2 non-coding upstream 729675 7116247 ~ 7116363 (-)

Expression


Co-expression Network