XLOC_003883 (ccl44)


Basic Information

Item Value
gene id XLOC_003883
gene name ccl44
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6182680 ~ 6188413 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007439
GACAGCACGGAGGAAAAATCCCTCTGAGGTTCCACCATGTTCCTGCAGACTGTCTCCATCCTCTTCCTCTCGGCCGTCCTCTTCGGCTGCCTGGAAGGGAAGGGTGTGCAAATGCAGCGAGATGTTCAGTGCTGCATGCAGTACTCTCACGGAAAAGTCCGGACCAAAGATGTCCTGAGGTATGAGAGGCAGACGGAGGGGCCGGATTGCAGCATAAGAGCCATCATATTGTACACCAAAAAGGCAGTGAAGTGCGCTGATCCGAGGGACAGGAAGGTGAAGAGGTTACTACGGAAACTGAACCAGAGGCTGGGAGCCAAAGCGCGCAGGACCATGTGGTTACATCCACATTTGAATCTGCCTGTTATGTCGGAGGTCGCTGTTGTGAATTCCCAAAAGATGAACAAGACCAAGTGAAAGTCGAGGGAAGACAGATGATTGATGAAACTCCAGCCTTCTTGTGTGTCACTGTTTTCTTACATGTTTaagaaaatctctgtagactcaTTCACTACCAAACAGTATGTTATCCAGATATGTTGTGATATTTAGATGTCCTCTCAAATGACTGTTAATCTATATGCCAAAGTATTCTTCTCTGAGACTTGTTAAGGTTGTTTATAATCTCTGCAGCTATATATAGTCTCTATAACTTATACGAGCTCTTCTAGAGTCCAGTAAGCTGGTATGACTGTTCTCCAACCGATTTATAGTGCAATTACAGATTCTCTTGTGTATGTTAAAACAcaactgatttttatatataaaataaatggaaaaattat
>TCONS_00007440
GACAGCACGGAGGAAAAATCCCTCTGAGGTTCCACCATGTTCCTGCAGACTGTCTCCATCCTCTTCCTCTCGGCCGTCCTCTTCGGCTGCCTGGAAGGTAAGgtgaaactctctctctctcttgcgtCTGATTGTGGTGTTGGAACGGGGCGGTTGGGACCAGATCTCGGTGGGAGGGAGAGAGGCTTAATGCTCTGATAGCCAGACCTGTTCAGGAGCTTCGGATGCTGGAGTTTCACGCATGTCAGAGGATACGAGGTATGATCAAGCATGATAGGAGGCTGTGCCTGCCACAAACAGGATGAAAAGGAGTCCGAATCAGACCACGACCCTCAGTTTTCTCCGCAAACTGTTGAACAGGCCAGTTTACATGCGTGCGGTGTCAGTTCTGATACTTGCTGATGGGTTCCAGGTGGGAATCTCTGTTGAATTCTGCTGCTGGTTtgtaatttctctctctctttctgccaGGGAAGGGTGTGCAAATGCAGCGAGATGTTCAGTGCTGCATGCAGTACTCTCACGGAAAAGTCCGGACCAAAGATGTCCTGAGGTATGAGAGGCAGACGGAGGGGCCGGATTGCAGCATAAGAGCCATCATGCAAATTGTACACCAAAAAGGCAGTGAAGTGCGCTGATCCGAGGGACAGGAAGGTGAAGAGGTTACTACGGAAACTGAACCAGAGGCTGGGAGCCAAAGCGCGCAGGACCATGTGGTTACATCCACATTTG

Function

symbol description
ccl44 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0002548 monocyte chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0071346 cellular response to interferon-gamma biological_process
GO:0071347 cellular response to interleukin-1 biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0048247 lymphocyte chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0048020 CCR chemokine receptor binding molecular_function
GO:0008009 chemokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-642 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDARG00000074772

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007439 False 785 mRNA 0.44 5 6182680 6188413
TCONS_00007440 True 732 lncRNA 0.52 2 6187382 6188413

Neighbor

gene id symbol gene type direction distance location
XLOC_003882 NA coding downstream 86314 6086300 ~ 6096366 (-)
XLOC_003881 CT573239.1 coding downstream 110614 6071960 ~ 6072066 (-)
XLOC_003880 babam1 coding downstream 112488 6051287 ~ 6070192 (-)
XLOC_003879 plvapb coding downstream 134190 6043742 ~ 6048490 (-)
XLOC_003878 NA coding downstream 175939 6005807 ~ 6006741 (-)
XLOC_003884 pole4 coding upstream 8863 6197276 ~ 6206625 (-)
XLOC_003885 ccl25b coding upstream 70635 6259048 ~ 6265723 (-)
XLOC_003886 NA coding upstream 88487 6276900 ~ 6278698 (-)
XLOC_003887 NA coding upstream 128241 6316654 ~ 6324557 (-)
XLOC_003888 nrtn coding upstream 161030 6349443 ~ 6386572 (-)
XLOC_003938 BX324177.10 misc upstream 5150391 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 5179181 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 5182042 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 5192491 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 5195420 11383833 ~ 11384130 (-)
XLOC_003876 NA non-coding downstream 218309 5957009 ~ 5964371 (-)
XLOC_003872 NA non-coding downstream 407778 5773096 ~ 5774902 (-)
XLOC_003891 NA non-coding upstream 241560 6429973 ~ 6431348 (-)
XLOC_003893 NA non-coding upstream 266621 6455034 ~ 6456300 (-)
XLOC_003894 BX936438.1 non-coding upstream 592295 6780708 ~ 6782076 (-)

Expression


Co-expression Network