Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007440 |
| length | 732 |
| lncRNA type | retained_intron |
| GC content | 0.52 |
| exon number | 2 |
| gene id | XLOC_003883 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 6182680 ~ 6188413 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043547 | positive regulation of GTPase activity | biological_process |
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0002548 | monocyte chemotaxis | biological_process |
| GO:0006954 | inflammatory response | biological_process |
| GO:0006955 | immune response | biological_process |
| GO:0071346 | cellular response to interferon-gamma | biological_process |
| GO:0071347 | cellular response to interleukin-1 | biological_process |
| GO:0071356 | cellular response to tumor necrosis factor | biological_process |
| GO:0048247 | lymphocyte chemotaxis | biological_process |
| GO:0070098 | chemokine-mediated signaling pathway | biological_process |
| GO:0070374 | positive regulation of ERK1 and ERK2 cascade | biological_process |
| GO:0030593 | neutrophil chemotaxis | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0048020 | CCR chemokine receptor binding | molecular_function |
| GO:0008009 | chemokine activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-131121-642 | Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Predicted to be active in extracellular space. |
| ensembl_id | ENSDART00000161952 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008749 | lncRNA | downstream | 91016 | 6086300 ~ 6096366 (-) | True | XLOC_003882 |
| TCONS_00007433 | lncRNA | downstream | 139041 | 6047073 ~ 6048341 (-) | True | XLOC_003879 |
| TCONS_00008449 | lncRNA | downstream | 180641 | 6005807 ~ 6006741 (-) | True | XLOC_003878 |
| TCONS_00008448 | lncRNA | downstream | 223011 | 5957009 ~ 5964371 (-) | True | XLOC_003876 |
| TCONS_00007426 | lncRNA | downstream | 321807 | 5857278 ~ 5865575 (-) | True | XLOC_003873 |
| TCONS_00007445 | lncRNA | upstream | 16157 | 6204570 ~ 6206556 (-) | True | XLOC_003884 |
| TCONS_00007448 | lncRNA | upstream | 73280 | 6261693 ~ 6262709 (-) | True | XLOC_003885 |
| TCONS_00008450 | lncRNA | upstream | 88487 | 6276900 ~ 6278698 (-) | True | XLOC_003886 |
| TCONS_00008750 | lncRNA | upstream | 128241 | 6316654 ~ 6324557 (-) | True | XLOC_003887 |
| TCONS_00008751 | lncRNA | upstream | 241560 | 6429973 ~ 6431132 (-) | False | XLOC_003891 |
| TCONS_00007437 | mRNA | downstream | 117190 | 6064033 ~ 6070192 (-) | True | XLOC_003880 |
| TCONS_00007435 | mRNA | downstream | 118301 | 6052031 ~ 6069081 (-) | False | XLOC_003880 |
| TCONS_00007434 | mRNA | downstream | 118957 | 6051287 ~ 6068425 (-) | False | XLOC_003880 |
| TCONS_00007436 | mRNA | downstream | 119007 | 6060535 ~ 6068375 (-) | False | XLOC_003880 |
| TCONS_00007432 | mRNA | downstream | 138892 | 6043742 ~ 6048490 (-) | False | XLOC_003879 |
| TCONS_00007442 | mRNA | upstream | 8864 | 6197277 ~ 6206625 (-) | False | XLOC_003884 |
| TCONS_00007443 | mRNA | upstream | 8896 | 6197309 ~ 6206520 (-) | False | XLOC_003884 |
| TCONS_00007444 | mRNA | upstream | 9687 | 6198100 ~ 6206625 (-) | False | XLOC_003884 |
| TCONS_00007446 | mRNA | upstream | 70635 | 6259048 ~ 6265574 (-) | False | XLOC_003885 |
| TCONS_00007447 | mRNA | upstream | 73269 | 6261682 ~ 6265723 (-) | False | XLOC_003885 |
| TCONS_00007438 | other | downstream | 115316 | 6071960 ~ 6072066 (-) | True | XLOC_003881 |
| TCONS_00007400 | other | downstream | 2233545 | 3953723 ~ 3953837 (-) | True | XLOC_003853 |
| TCONS_00007330 | other | downstream | 5098867 | 1069406 ~ 1088515 (-) | False | XLOC_003806 |
| TCONS_00007326 | other | downstream | 5207634 | 923795 ~ 979748 (-) | True | XLOC_003803 |
| TCONS_00007304 | other | downstream | 5727452 | 459815 ~ 459930 (-) | True | XLOC_003793 |
| TCONS_00007441 | other | upstream | 8863 | 6197276 ~ 6206589 (-) | False | XLOC_003884 |
| TCONS_00007456 | other | upstream | 592295 | 6780708 ~ 6782076 (-) | True | XLOC_003894 |
| TCONS_00007463 | other | upstream | 755887 | 6944300 ~ 6948018 (-) | False | XLOC_003898 |
| TCONS_00007477 | other | upstream | 927834 | 7116247 ~ 7116363 (-) | True | XLOC_003904 |
| TCONS_00007494 | other | upstream | 1922956 | 8111369 ~ 8126195 (-) | True | XLOC_003913 |
