XLOC_003880 (babam1)


Basic Information

Item Value
gene id XLOC_003880
gene name babam1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6051287 ~ 6070192 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007434
CTCTTTAACAGTCAGCTCGGTTCGAACAATCGAACAAGGAAGTGTTGAGGAATAATATTGTGAAAACAGCATTTGATTATTTTACTACTAAATTCGTTTTCATTTAATGTTTGAATGTTTGCTGTCATCCTCCTCATTCCGTCTTCTGTAGAAAGGGATCAGtgtaattgagGTTGCCATGGAGACCACTGAGCCAGGTCAGGCAGATGGAGAGGAGCGGATGATGGACCTGAGACCCAGGACCCGCTCCAATCCAGAGGGTGCGGAGGATCGGCGGAGCAGCACGGGCAGCCTCAACAGCAGCCTGCCATCTGCGCCACAGCCGGCCGTGGGCAGCCGTGTAGAGGGAGAAGGAGAGGCGGCCAGCTCTGACAGCCCACCGGTCTCTGCCACCGCCATCGCAGCCACTGCTTCTGTCCCCGTTGCTGCAGTGGgaaacaccaccaccaccaacaccGCCAGCCTGCCTGCTATGAGTCCTGCAGTGAAGGAAAGACCCAAACCCTCTCAGCCGACCATGCCCACCCAGATCCCCCCATCAGCTGAGCTGCACCTGCGGGCACCACGAGTCAACTGCCCTGAAAAAGTGATCATCTGCTTGGACCTTTCAGAGGAAATGTCTTTACAAAAGCTGGAGTCCATCAATGGATCCAAGACGAACGCCTTAAATATTTCACAGAAAATGATTGAGATGTTTGTGAGAACCAAACACAAGATTGACAAGAGGCATGAGTTTGCTCTGGTGGTGGTGAATGATGATGCCATGTGGTTATCAGGATTCACGTCTGACCCTCGGGAGCTGTGCAGCTGTCTGTATGACCTGGAAACCAACGTCTGCGAGTCCTTCAATCTGGAAGATCTCTTCAATGTCATTTTGCAGAAAATTGAACTTCCTCAAATGGAGAATATTCAGACCATTCCTCCCCCTTTTGTAGTTCGGACTCTTCTTGTGTTCAGTCGGCATGCGGGCATGCTGCAGTTCAACCCCTCTGATGCTGTCAAAAAAATGCTGCAGTCTCCCTACTTCTTCTTTGATGTGGTTTTCCTTCATAATGGAACTGAAGAGCAGACAGAGGACACCAGCTGGAAGgaCGTGTACGCCTCCTTCTGCGAGCTGGACACTAAGGGCATGTGTTATCGCTTTGAGGTGTCGCTGTGTGGTCCTGCTATTGAGCTGCACAACTGCATGGCCAAACTGCTGTGCCATCCACTGCAGAGGCCCTTCCAGAGCCACGCGTCCTACAGTCTGCTGGAGGACGAGGACACGCTGGAGAACGAAGCCACTGTGTGAGATTTTACTCAGTAGACCCATCAAATCACCTAGATTAGGGACTGATGAACTCCAAAATGAAGGAGTGACCTGTGAATAACTGCTTTGCCTGTTATATCTGTACTATCGATgtctcttttatttctttaaaacttCAGTGTCTTAATTTCCTAAAGCCGCCATAACAAATCTAAAGACAATTGTGGATGAGTTGAGTATTGGTGGTTTGATCCCAGCACAGGATCCACTAAATAATCAGCATTTAGAATGTCACCTGTAAGTGAttcatgtgtttgtgtggtgGAGGTTCAGAGATGAGCTTGTGGGAATGGTGCTCATTGAGATCCGTTGGTTAGTGCTAAAGGTTTGGTGGGAGCACATTTGGACAGCATCTAATAAATACGGTTTGCTTGTTATAGCCAAATAAATGAAAAGGAAATACCCTGTGGGACTCTTTTCTACACAGAAAAACACAGGGATCAATGTTACAGGGTTCACACGGTTATGGAAAACCtggacatggcattttccaggcctggaaaagttttggaaaaacccacaaagttttggaaaactcatggaaattacatttatcatttagcagacattttcgTCCAAAGCgatttaagctgtggtcacactagagtttgtgcttgcaaaattctgtcgtatggtCCTGCGAAAAGGGGGGGGGTTAAACAATATGATTGGACATTAATAAAAGTGAGAAACTGTTCAGTTTAGtaataaaaattgtttatttca
>TCONS_00007435
cttTAATTAAGCTATAGTGGTGTGGCCAGGTAggggccttacaagataatgtgcccaggccctgagttcttaatccgggcctggttacAGCTGAAATAAACTTTATAACTCAAAAACAATGTTACGCATAataatacagctgttttgtgtcagttaaatcagttgactgttgaaatttttacatttaattttaacatttttaacccaactggttgagttattaaataaataagcaaataaaggTTAGAAATAACATAACAAagtaccaaatatttaactcagctggttgagttattaataaataacctacaggttaaaaataacccatcaaagcaccaaatatttaactcagctggttgagttattaattaaTAACCTACAGGTTAAAAATACTACAACAatgcaccaaatatgtttaactcaaccattgggttaaataaataactcaacattttttagagtgctgcgtaaaacatatactggataagttgtcggttaaTTCctacggattaataaagggactaagttgaaaagaaaatgaatgaatgaacgtaatATGCAATCACAccattatatattacattattattacatcatTACCTTGCACGTGAAACCTCTAAATCTCCAGTCCACAAGAGGCGCTGATGACCGAAACACTCTTTAACAGTCAGCTCGGTTCGAACAATCGAACAAGGAAGTGTTGAGGAATAATATTGTGAAAACAGCATTTGATTATTTTACTACTAAATTCGTTTTCATTTAATGTTTGGTTGCCATGGAGACCACTGAGCCAGGTCAGGCAGATGGAGAGGAGCGGATGATGGACCTGAGACCCAGGACCCGCTCCAATCCAGAGGGTGCGGAGGATCGGCGGAGCAGCACGGGCAGCCTCAACAGCAGCCTGCCATCTGCGCCACAGCCGGCCGTGGGCAGCCGTGTAGAGGGAGAAGGAGAGGCGGCCAGCTCTGACAGCCCACCGGTCTCTGCCACCGCCATCGCAGCCACTGCTTCTGTCCCCGTTGCTGCAGTGGgaaacaccaccaccaccaacaccGCCAGCCTGCCTGCTATGAGTCCTGCAGTGAAGGAAAGACCCAAACCCTCTCAGCCGACCATGCCCACCCAGATCCCCCCATCAGCTGAGCTGCACCTGCGGGCACCACGAGTCAACTGCCCTGAAAAAGTGATCATCTGCTTGGACCTTTCAGAGGAAATGTCTTTACAAAAGCTGGAGTCCATCAATGGATCCAAGACGAACGCCTTAAATATTTCACAGAAAATGATTGAGATGTTTGTGAGAACCAAACACAAGATTGACAAGAGGCATGAGTTTGCTCTGGTGGTGGTGAATGATGATGCCATGTGGTTATCAGGATTCACGTCTGACCCTCGGGAGCTGTGCAGCTGTCTGTATGACCTGGAAACCAACGTCTGCGAGTCCTTCAATCTGGAAGATCTCTTCAATGTCATTTTGCAGAAAATTGAACTTCCTCAAATGGAGAATATTCAGACCATTCCTCCCCCTTTTGTAGTTCGGACTCTTCTTGTGTTCAGTCGGCATGCGGGCATGCTGCAGTTCAACCCCTCTGATGCTGTCAAAAAAATGCTGCAGTCTCCCTACTTCTTCTTTGATGTGGTTTTCCTTCATAATGGAACTGAAGAGCAGACAGAGGACACCAGCTGGAAGgaCGTGTACGCCTCCTTCTGCGAGCTGGACACTAAGGGCATGTGTTATCGCTTTGAGGTGTCGCTGTGTGGTCCTGCTATTGAGCTGCACAACTGCATGGCCAAACTGCTGTGCCATCCACTGCAGAGGCCCTTCCAGAGCCACGCGTCCTACAGTCTGCTGGAGGACGAGGACACGCTGGAGAACGAAGCCACTGTGTGA
>TCONS_00007436
AATAATATTGTGAAAACAGCATTTGATTATTTTACTACTAAATTCGTTTTCATTTAATGTTTGGTTGCCATGGAGACCACTGAGCCAGGTCAGGCAGATGGAGAGGAGCGGATGATGGACCTGAGACCCAGGACCCGCTCCAATCCAGAGGGTGCGGAGGATCGGCGGAGCAGCACGGGCAGCCTCAACAGCAGCCTGCCATCTGCGCCACAGCCGGCCGTGGGCAGCCGTGTAGAGGGAGAAGGAGAGGCGGCCAGCTCTGACAGCCCACCGGTCTCTGCCACCGCCATCGCAGCCACTGCTTCTGTCCCCGTTGCTGCAGTGGgaaacaccaccaccaccaacaccGCCAGCCTGCCTGCTATGAGTCCTGCAGTGAAGGAAAGACCCAAACCCTCTCAGCCGACCATGCCCACCCAGATCCCCCCATCAGCTGAGCTGCACCTGCGGGCACCACGAGTCAACTGCCCTGAAAAAGTGATCATCTGCTTGGACCTTTCAGAGGAAATGTCTTTACAAAAGCTGGAGTCCATCAATGGATCCAAGACGAACGCCTTAAATATTTCACAGAAAATGATTGAGATGTTTGTGAGAACCAAACACAAGATTGACAAGAGGCATGAGTTTGCTCTGGTGGTGGTGAATGATGATGCCATGTGGTTATCAGGATTCACGTCTGACCCTCGGGAGCTGTGCAGCTGTCTGTATGACCTGGAAACCAACGTCTGCGAGTCCTTCAATCTGGAAGATCTCTTCAATGTCATTTTGCAGAAAATTGAACTTCCTCAAA
>TCONS_00007437
GAATGTCATTCACTTTTTCTCGTGTACACACTCACCTGTGGCTTAAAATGTAGCGAAAAATAAACTCCATTGCTACTCCACCGGAGATCAGCTTCAGCACTGCAGGGGGTGGTGGGAGacatatccagctgcagacccgctcacagAATGTTTGCTGTCATCCTCCTCATTCCGTCTTCTGTAGAAAGGGATCAGtgtaattgagGTTGCCATGGAGACCACTGAGCCAGGTCAGGCAGATGGAGAGGAGCGGATGATGGACCTGAGACCCAGGACCCGCTCCAATCCAGAGGGTGCGGAGGATCGGCGGAGCAGCACGGGCAGCCTCAACAGCAGCCTGCCATCTGCGCCACAGCCGGCCGTGGGCAGCCGTGTAGAGGGAGAAGGAGAGGCGGCCAGCTCTGACAGCCCACCGGTCTCTGCCACCGCCATCGCAGCCACTGCTTCTGTCCCCGTTGCTGCAGTGGgaaacaccaccaccaccaacaccGCCAGCCTGCCTGCTATGAGTCCTGCAGTGAAGGAAAGACCCAAACCCTCTCAGCCGACCATGCCCACCCAGATCCCCCCATCAGCTGAGCTGCACCTGCGGGCACCACGAGTCAACTGCCCTGAAAAAGTGATCATCTGCTTGGACCTTTCAGAGGAAATGTCTTTACAAAAGCTGGAGTCCATCAATGGATCCAAGACGAACGCCTTAAATATTTCACAGAAAATGATTGAGATGTTTGTGAGAACCAAACACAAGATTGACAAGAGGCATGAGTTTGCTCTGGTGGTGGTGAATGATGATGCCATGTGG

Function

symbol description
babam1 Predicted to be involved in several processes, including positive regulation of DNA repair; protein K63-linked deubiquitination; and response to ionizing radiation. Predicted to act upstream of or within DNA repair; cell division; and chromatin organization. Predicted to be located in cytoplasm and nucleus. Predicted to be part of BRCA1-A complex and BRISC complex. Orthologous to human BABAM1 (BRISC and BRCA1 A complex member 1).

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0006325 chromatin organization biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0072425 signal transduction involved in G2 DNA damage checkpoint biological_process
GO:0007049 cell cycle biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0051301 cell division biological_process
GO:0006281 DNA repair biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0070552 BRISC complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-6 Predicted to be involved in several processes, including positive regulation of DNA repair; protein K63-linked deubiquitination; and response to ionizing radiation. Predicted to act upstream of or within DNA repair; cell division; and chromatin organization. Predicted to be located in cytoplasm and nucleus. Predicted to be part of BRCA1-A complex and BRISC complex. Orthologous to human BABAM1 (BRISC and BRCA1 A complex member 1).

Ensembl:

ensembl_id ENSDARG00000077526

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007434 False 2035 mRNA 0.47 10 6051287 6068425
TCONS_00007435 False 1888 mRNA 0.45 9 6052031 6069081
TCONS_00007436 False 790 mRNA 0.52 7 6060535 6068375
TCONS_00007437 True 802 mRNA 0.55 5 6064033 6070192

Neighbor

gene id symbol gene type direction distance location
XLOC_003879 plvapb coding downstream 2797 6043742 ~ 6048490 (-)
XLOC_003878 NA coding downstream 44546 6005807 ~ 6006741 (-)
XLOC_003877 ano8b coding downstream 49442 5965168 ~ 6001845 (-)
XLOC_003876 NA coding downstream 86916 5957009 ~ 5964371 (-)
XLOC_003875 dda1 coding downstream 97639 5945186 ~ 5953648 (-)
XLOC_003881 CT573239.1 coding upstream 1768 6071960 ~ 6072066 (-)
XLOC_003882 NA coding upstream 16108 6086300 ~ 6096366 (-)
XLOC_003883 ccl44 coding upstream 112488 6182680 ~ 6188413 (-)
XLOC_003884 pole4 coding upstream 127084 6197276 ~ 6206625 (-)
XLOC_003885 ccl25b coding upstream 188856 6259048 ~ 6265723 (-)
XLOC_003938 BX324177.10 misc upstream 5268612 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 5297402 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 5300263 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 5310712 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 5313641 11383833 ~ 11384130 (-)
XLOC_003872 NA non-coding downstream 276385 5773096 ~ 5774902 (-)
XLOC_003870 NA non-coding downstream 536123 5514378 ~ 5515164 (-)
XLOC_003869 NA non-coding downstream 1199139 4809715 ~ 4852148 (-)
XLOC_003886 NA non-coding upstream 206708 6276900 ~ 6278698 (-)
XLOC_003887 NA non-coding upstream 246462 6316654 ~ 6324557 (-)
XLOC_003891 NA non-coding upstream 359781 6429973 ~ 6431348 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01058752_00001532_00004911 NA coding CI01058752 null 1412 ~ 4911 (+)