XLOC_003872


Basic Information

Item Value
gene id XLOC_003872
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5773096 ~ 5774902 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008748
GACAGACTTCATCATACTTGTCATCTACTTTCCTCGTCTCAAGTTCAGCGATGTACATGGAAAGCAACGGGACAAACTgctaacagcgggaaagccgtccatatggagaaaagcgatcagctgCGGAGGTGTGAAGGAGTGACTCTTCAGCAGGGAAAGGTCAAGGACGACAGCCAGGGTACTGCCGAGCTTTAATCTGTTTCACAAAACTTGAGGTGGCTATTCACACCCACAGGTTCCCCCAAACAACCACTGAAGCAACTGCATTCCAATAGTGTTATGTGTGCACTTGAGTTTTGAAGCAGCAAACTGACCTTTAGGGATTCGCCTCCAATACCAATCGCCAATTTAAGGTACCATTAACGAAATCAAATGTTGGCTATTTGACACATTCGAACGTAATTTAATTTTACCAAAATCTGACAGTGAACACAGTGGTATGATTTGGTGGCAGGTACGTTAGGTAATGCTAGGTATACAGGGACAATTCTGCCCGTGATGCCCCTCAAATTTGGGCCAATTATATTGTAACAAACAAATGTTACatgctttaattgttgttttagttCCTTGTGATGTGAGAAGCAGGTTTGCAGTATTACGACAGGCCACTAGGTTGCACTAGAGGGGAGTGAGTACTGGATATAATCCAGCTCACCATAGAGCAAGTAAGTCGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008748 True 678 lncRNA 0.44 2 5773096 5774902

Neighbor

gene id symbol gene type direction distance location
XLOC_003871 pex11g coding downstream 209598 5554163 ~ 5563498 (-)
XLOC_003870 NA coding downstream 257932 5514378 ~ 5515164 (-)
XLOC_003868 NA coding downstream 841097 4492467 ~ 4931999 (-)
XLOC_003869 NA coding downstream 920948 4809715 ~ 4852148 (-)
XLOC_003867 NA coding downstream 1302422 4435273 ~ 4470674 (-)
XLOC_003873 gamt coding upstream 81021 5855923 ~ 5865744 (-)
XLOC_003874 abhd8b coding upstream 158733 5933635 ~ 5939861 (-)
XLOC_003875 dda1 coding upstream 170284 5945186 ~ 5953648 (-)
XLOC_003876 NA coding upstream 182107 5957009 ~ 5964371 (-)
XLOC_003877 ano8b coding upstream 190266 5965168 ~ 6001845 (-)
XLOC_003938 BX324177.10 misc upstream 5563902 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 5592692 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 5595553 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 5606002 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 5608931 11383833 ~ 11384130 (-)
XLOC_003866 NA non-coding downstream 1419663 4350478 ~ 4353433 (-)
XLOC_003878 NA non-coding upstream 230905 6005807 ~ 6006741 (-)
XLOC_003881 CT573239.1 non-coding upstream 297058 6071960 ~ 6072066 (-)
XLOC_003882 NA non-coding upstream 311398 6086300 ~ 6096366 (-)
XLOC_003886 NA non-coding upstream 501998 6276900 ~ 6278698 (-)

Expression


Co-expression Network