XLOC_003873 (gamt)


Basic Information

Item Value
gene id XLOC_003873
gene name gamt
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5855923 ~ 5865744 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007425
GGGTTAACCGTCATGAATCAGAGTCTGCTCCAGCTGTCTAGAGTGCTGCATGTGAAGACCAACCCCCTGCTCAGAGGACTCCTTATCAACACTCACTGTTGGACTACACTGATTCTTGCACAATCAGCAGTTCTTTAAATATATAACACTCAAGTCCCGGCAGAGTCGACCTCTTCAGCCACCGCGCGTTCACGCCACTCCACATCTGCACATCTGCAATCTACATTCAGCAGTCCACCATGAGCGCCGCTCAGCCGATCTTCTCAAAGGGCGAAAACTGCAAACAAGTGTGGCACGACGCGAACGCAGACTACAATGCGGCCGACACACACCTGGAGATCATGGGGAAACCCGTCATGGAGCGCTGGGAAACTCCGTACATGCACTCTCTTGCAACAGTCGCGGCGTCTAAAGGTGGAAGGGTGCTGGAGATCGGCTTTGGGATGGCCATAGCAGCTACTAAAGTGGAGTCCTTCCCCATCGAGGAGCACTGGATCATTGAGTGTAATGACGGCGTATTCCAGAGGCTACAGGAATGGGCCAAGAGTCAGCCACATAAaGTTGTCCCGCTGAAAGGCCTGTGGGAAGAGGTCGCCCCAACCCTACCTGACAATCACTTTGACGGCATTCTCTATGACACATACCCTTTGTCAGAGGAGACCTGGCACACACATCAGTTCAACTTTATCAAGGCTCACGCTCACAGAATGCTGAAGCCTGGCGGCGTGCTCACATACTGTAACCTCACGTCCTGGGGAGAGCTGCTCAAAAACAAATACGACAACATAGACAAAATGTTCCAAgagACACAAGTTCCTCACCTGCTGGAAGCTGGGTTCAAGAAAGAGAAGATCAGCACCACATTGATGGACATCAGTCCTCCCAGCGAATGCAAATACTATTCCTTCAATAAGATGATCACACCAACTATTATTAaagaataaatactttaataaaactGTATATAAATCATTCTGCTAGACTTCA
>TCONS_00007426
CCTCTTCAGCCACCGCGCGTTCACGCCACTCCACATCTGCACATCTGCAATCTACATTCAGCAGTCCACCATGAGCGCCGCTCAGCCGATCTTCTCAAAGGGCGAAAACTGCAAACAAGTGTGGCACGACGCGAACGCAGACTACAATGCGGCCGACACACACCTGGAGATCATGGGGAAACCCGTCATGGAGCGCTGGGAAACTCCGTACATGCACTCTCTTGCAACAGTCGCGGCGTCTAAAGGTGGAAGGGTGCTGGAGATCGGCTTTGGGATGGCCATAGCAGCTACTAAAGTGGAGTCCTTCCCCATCGAGGAGCACTGGATCATTGAGTGTAATGACGGCGTATTCCAGAGGCTACAGGAATGGGCCAAGAGTCAGCCACATAAaGTTGTCCCGCTGAAAGGCCTGTGGGAAGAGGTCGCCCCAACCCTACCTGACAATCACTTTGACGGTACATCTTTAAAAGTATATAATAACAACTTTAAatgtttaagggatagttcacgcaaaaatgtaaatattactcaCTGTAAACATGAGATTCctccttctgttaaacacaaaagaagatattttgaggaaagatgaaaacctgtaaccgttgactcccatattatttgtttttctcattatggaagtgaatggttacatttgtggaaatatttctaatatttctACATTTCTAATAATCTAATTTCAAATGGACAGTAATCTACATATAACTGAacagttatattctttggtttttggTTGCATCATTTCATTAACAGCCCAGCCATGAGAGACATTAACCTTTGGTTTTCTGGCTACAggctaaggccccgtttac

Function

symbol description
gamt Predicted to enable guanidinoacetate N-methyltransferase activity. Predicted to be involved in creatine biosynthetic process. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and yolk. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and guanidinoacetate methyltransferase deficiency. Orthologous to human GAMT (guanidinoacetate N-methyltransferase).

GO:

id name namespace
GO:0006601 creatine biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0030731 guanidinoacetate N-methyltransferase activity molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism
ko00330 Arginine and proline metabolism

ZFIN:

id description
ZDB-GENE-051030-97 Predicted to enable guanidinoacetate N-methyltransferase activity. Predicted to be involved in creatine biosynthetic process. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and yolk. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and guanidinoacetate methyltransferase deficiency. Orthologous to human GAMT (guanidinoacetate N-methyltransferase).

Ensembl:

ensembl_id ENSDARG00000070844

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007425 False 987 mRNA 0.49 6 5855923 5865744
TCONS_00007426 True 833 lncRNA 0.45 3 5857278 5865575

Neighbor

gene id symbol gene type direction distance location
XLOC_003872 NA coding downstream 81021 5773096 ~ 5774902 (-)
XLOC_003871 pex11g coding downstream 292425 5554163 ~ 5563498 (-)
XLOC_003870 NA coding downstream 340759 5514378 ~ 5515164 (-)
XLOC_003868 NA coding downstream 923924 4492467 ~ 4931999 (-)
XLOC_003869 NA coding downstream 1003775 4809715 ~ 4852148 (-)
XLOC_003874 abhd8b coding upstream 67891 5933635 ~ 5939861 (-)
XLOC_003875 dda1 coding upstream 79442 5945186 ~ 5953648 (-)
XLOC_003876 NA coding upstream 91265 5957009 ~ 5964371 (-)
XLOC_003877 ano8b coding upstream 99424 5965168 ~ 6001845 (-)
XLOC_003878 NA coding upstream 140063 6005807 ~ 6006741 (-)
XLOC_003938 BX324177.10 misc upstream 5473060 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 5501850 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 5504711 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 5515160 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 5518089 11383833 ~ 11384130 (-)
XLOC_003867 NA non-coding downstream 1385249 4435273 ~ 4470674 (-)
XLOC_003881 CT573239.1 non-coding upstream 206216 6071960 ~ 6072066 (-)
XLOC_003882 NA non-coding upstream 220556 6086300 ~ 6096366 (-)
XLOC_003886 NA non-coding upstream 411156 6276900 ~ 6278698 (-)

Expression


Co-expression Network