RNA id: TCONS_00007426


Basic Information

Item Value
RNA id TCONS_00007426
length 833
lncRNA type retained_intron
GC content 0.45
exon number 3
gene id XLOC_003873
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5855923 ~ 5865744 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTTCAGCCACCGCGCGTTCACGCCACTCCACATCTGCACATCTGCAATCTACATTCAGCAGTCCACCATGAGCGCCGCTCAGCCGATCTTCTCAAAGGGCGAAAACTGCAAACAAGTGTGGCACGACGCGAACGCAGACTACAATGCGGCCGACACACACCTGGAGATCATGGGGAAACCCGTCATGGAGCGCTGGGAAACTCCGTACATGCACTCTCTTGCAACAGTCGCGGCGTCTAAAGGTGGAAGGGTGCTGGAGATCGGCTTTGGGATGGCCATAGCAGCTACTAAAGTGGAGTCCTTCCCCATCGAGGAGCACTGGATCATTGAGTGTAATGACGGCGTATTCCAGAGGCTACAGGAATGGGCCAAGAGTCAGCCACATAAaGTTGTCCCGCTGAAAGGCCTGTGGGAAGAGGTCGCCCCAACCCTACCTGACAATCACTTTGACGGTACATCTTTAAAAGTATATAATAACAACTTTAAatgtttaagggatagttcacgcaaaaatgtaaatattactcaCTGTAAACATGAGATTCctccttctgttaaacacaaaagaagatattttgaggaaagatgaaaacctgtaaccgttgactcccatattatttgtttttctcattatggaagtgaatggttacatttgtggaaatatttctaatatttctACATTTCTAATAATCTAATTTCAAATGGACAGTAATCTACATATAACTGAacagttatattctttggtttttggTTGCATCATTTCATTAACAGCCCAGCCATGAGAGACATTAACCTTTGGTTTTCTGGCTACAggctaaggccccgtttac

Function

GO:

id name namespace
GO:0006601 creatine biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0030731 guanidinoacetate N-methyltransferase activity molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism
ko00330 Arginine and proline metabolism

ZFIN:

id description
ZDB-GENE-051030-97 Predicted to enable guanidinoacetate N-methyltransferase activity. Predicted to be involved in creatine biosynthetic process. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and yolk. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and guanidinoacetate methyltransferase deficiency. Orthologous to human GAMT (guanidinoacetate N-methyltransferase).

Ensembl:

ensembl_id ENSDART00000141825

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008748 lncRNA downstream 82376 5773096 ~ 5774902 (-) True XLOC_003872
TCONS_00008447 lncRNA downstream 293857 5556890 ~ 5563421 (-) True XLOC_003871
TCONS_00008747 lncRNA downstream 342114 5514378 ~ 5515164 (-) True XLOC_003870
TCONS_00008745 lncRNA downstream 925279 4786977 ~ 4931999 (-) True XLOC_003868
TCONS_00008746 lncRNA downstream 1005130 4809715 ~ 4852148 (-) True XLOC_003869
TCONS_00008448 lncRNA upstream 91434 5957009 ~ 5964371 (-) True XLOC_003876
TCONS_00008449 lncRNA upstream 140232 6005807 ~ 6006741 (-) True XLOC_003878
TCONS_00007433 lncRNA upstream 181498 6047073 ~ 6048341 (-) True XLOC_003879
TCONS_00008749 lncRNA upstream 220725 6086300 ~ 6096366 (-) True XLOC_003882
TCONS_00007440 lncRNA upstream 321807 6187382 ~ 6188413 (-) True XLOC_003883
TCONS_00007424 mRNA downstream 293780 5554163 ~ 5563498 (-) False XLOC_003871
TCONS_00007422 mRNA downstream 1070195 4492467 ~ 4787083 (-) False XLOC_003868
TCONS_00007423 mRNA downstream 1260847 4594475 ~ 4596431 (-) False XLOC_003868
TCONS_00007420 mRNA downstream 1555027 4296726 ~ 4302251 (-) True XLOC_003863
TCONS_00007419 mRNA downstream 1556447 4296560 ~ 4300831 (-) False XLOC_003863
TCONS_00007427 mRNA upstream 68060 5933635 ~ 5939861 (-) False XLOC_003874
TCONS_00007428 mRNA upstream 68613 5934188 ~ 5939460 (-) True XLOC_003874
TCONS_00007429 mRNA upstream 79611 5945186 ~ 5953648 (-) False XLOC_003875
TCONS_00007430 mRNA upstream 81192 5946767 ~ 5953636 (-) True XLOC_003875
TCONS_00007431 mRNA upstream 99593 5965168 ~ 6001845 (-) True XLOC_003877
TCONS_00007400 other downstream 1903441 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 4768763 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 4877530 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 5397348 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 5505577 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 206385 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 331701 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 915133 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 1078725 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 1250672 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

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