RNA id: TCONS_00007431


Basic Information

Item Value
RNA id TCONS_00007431
length 4052
RNA type mRNA
GC content 0.52
exon number 17
gene id XLOC_003877
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5965168 ~ 6001845 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTCCCTCCTCCACCATAGTAGCCTGTACTCCTCCTCGCGCCGCAGTCGCTCTCTCCTCGCATCGCATCCCGCTGCAAACAGGATGACTCACAACAACCTTCACTTCACCCTCACCTTCATTTAACCCAGCCGGTGTGTATCCTCGCACACTGCGCCCCATTTCTGCCTTCATTCCCCGCTGAAACAGCAGCAGCATGATGCCCGACACGGCGGCGGCCGCTGCTGCATCATCGGCGAGcaacatcagcagcagcagcgaCGGCGAGAGCTCGCGGCTCAGACACCGGGCGCAGGGAGACGCGGAGCGGGCAGAGCAGCAGCAGCACACCGCTGCCCCTCAGACCACATCAGCTGGCGTTTTGGATAAGCTATTTGGAAAGCGGCTGCTGCAGGCCGGGAGACACATCATGTCCCATAAATCCTGGATGAAGACGGTGCCCACAGAGAACTGTGATGTCCTTATGACGTTTCCAGACACCACAGATGACCACACGCTGCTCTGGCTCCTGAACCACATACGGCTCGGCATCCCAGAACTCATTATCCAGATCCGGCATCACAAACACACCCGAATGTACGCCTTCTTTGTCACCGCCACATATGAAAAtCTTTTGCGAGGGGCTGAGGAGATGGGACTTCAGAAAGCTGTGAAGCCAGAGTTTGGCGGCGGCTCTCGCAGTTTCTCCTGTGAGGAAGATTACATCTACGAGAACATCGAGAGTGAACTCTGTTTCTTCACCTCACAGGAGCGGCAAAGCATAATCAAATACTGGCTGGACAATCTCAGAGCAAAACACGGGGAGGCCCTTCACAACATTCACTTCCTGGAAGGGCAACCAATCATTCCTGAGCTGAGGGCGCGAGGTGTGATCCAGCAAGTCTTCCCGCTTCACGAGCAGAGGATTCTGGGGCAGCTGATGAAGTCATGGGTGCAGGCTGTGTGTGAAAAACAGCCTCTGGatgatatttgtgattattttggaGTGAAGATCGCCATGTACTTCGCTTGGTTGGGTTTCTACACTACTTCCATGTTGTATCCAGCCGTTATTGGCTTTGTATTGTGGATGCTTACAGAATCAGACCAGACCAGCAGGGATATCTGTTGTGTGGTGTTTGCTCTCTTTAATGTGGTGTGGGCCACGTTGTTCCTGGAGCGCTGGAAACGCAGAGGAGCAGAGCTGGCGTATAAGTGGGGAACGCTGAACACCCCTGCAGAGTCACTGGAAGAGCCCAGACCTCAGTTCAGGGGTGTGAAGAGGTGCAGTCCAGTGACGGGCTGTGAAGAGTTTTATTACCCACCGTGGAGGAGGAGAGTGTTCAGGTGGCTGGTCAGCTTTCCTGTCTGTATTTTATGCCTTTGCTTTGTATTTCTGGCCATGCTCGTCTGCTTTGAGCTTCAGGAATTCGTGATGGGGATTAAGGAGCTTCCACGAGTAGCAAGATTCATCCCTAAAATCATGTTGGCCATCACTGTGACGGCGTGTGATGAGGTGTACAGAAAGATCGCCTGCTGGCTAAATGACATGGAAAACTACAGACTTCAGAGTGCCTATGAGAAAAATCTCATCATCAAAATGGTTCTTTTTCAGTTTGTAAATTCTTATCTCAGCCTTTTCTACATTGGATTCTACCTCAAAGACATGGAGCGTCTGAAAGAGATGCTGGCCACGCTGCTGATTATCCGGCAGTTTGTGCAGAACATGAAGGAAGTCCTGCAGCCCTACCTGGCGGAGCGGCACCGATTGGGTGAGCTGACGCTGAGGGCCGTTTGGGAGCTGCTGGTGTCGGCACTGCTCAAATATGGTCGTCTCGCAGCAGGACGAGCACAGGTCTCACCCAGCGACCCAACAGTGCTCGGGCCAGGTCTGCGAGGTCCACAGATGGGTGAGGAGGGACACCAAGATAGACGAGAACGCAAGTGTCTGAACGGTGGCTGCGGCGTCCCGGATGAAGACATGGAGGAGGAACACGGGGAGAGGCACAGCGAAGAAGAAAACGAATCCGAGAGCCTCATTGACTGCGGCCTGAAGCTACGCAAGGTCAGCTTCATCGAGAAGGTGGAGCGCAAGTCTGCGAGCTGCGTCAGCCCAGTGGACGACAGCTTCCTGGAGGAGGGGAGTCCCACCATGGTGGAGAGGGGCATGGATCCTGCATCGGTTTTCGAGATGTGTGATGATGAGGATGAAAACGGGGCTCCGGAGATGAAGGAGCTGGCAGCAGAGCCGCTGCCGACTGGAGTGGAGAACAGCTCCTCGGTAAAGCTCAGGAAGAGGGGACGCAGCTTAGAGAGAGCTGACAGCAAGACCAAGAGAGATTCGTGGATGGATCCTCCTGAGGAGCAAGAAACCAACACACTCACACAGGCAGAGGTTGAGGGCTGCATGCAAACGTACCAGGACACATTTCAGGACTACCAGGAGATGTTCGTCCAGTTTGGATATGTGGTGCTCTTTTCCTCTGCCTTCCCATTGGCCGCCATGTGTGCCCTCATCAACAATATCATCGAGATCCGGAGTGACGCTTTTAAACTGTGCACCAGCCTACAGAGACCGTTCGGCCTGAGGGTGGCGAGCATCGGACAATGGCAGACAGTGATGGAAGCCATGGGTCTGATTGCCATCATAGTGAACTGCTATCTGATTGGTCAGTGTGGGCAGCTTCAGAGACTGTTTCCCTGGCTTAGTCCAGAGATGGCCATAATCTCTATTGTCATCCTAGAGCACTTTGCAGTACTTCTAAAGTATATCATTCATGTGGCAATACCAGACATCCCCAGCTGGGTAGGAGAAGAAATGGCCAAGCTGGAGTTTCAGCGCAAAGAGGCGTTCAAGAAGCACGAGCGTCAGGCGCAGCAGCATTTCCAGCAGCAGCAGCGGAGGAAGCGTGAGGAGGAGGAGCGGCAGCGGCAGGCCGAGTATCAGGCCCGACGGGACAGAGACGACGGCCGCTCGGACGCCTCTGGCAGTGACCACCACCATGAGAAGAGCCAGAGTGGCAAAGCCAGATCAGGGGGCGGAGGAGGCTCTTCTGGCGGAGAGAAACCCAAGCGGCCCAGCTCGCTTCTTGGCAACAACAATGTGATGAAACTGAAGCAGATCATCCCTCTACAGAATAAGTTTTCTTCCGGCACAGCTCGTTCCCCACAGTCACCCACAGGGAACGAACCTAAGCTACCAGGTTTCCTCAGTTTCAAGTTCCTGAAGTCTCCAGAGAACAAGAAGGAAGCGGCGATGGCTTCTGCCAGTGCGTCAGTGGCTCCCCCAGTCCAGGAGAAGGTAGAGAGGTCCCAATCACCCAACAAGTCCTTCAATCCCGGCAAACTTTTTAACTTTGGTAAATCGGAAGGTGGTGCATGTGTGAACGGGGCTCAGCTTTCAAAACTAGGGGATGGGGGACAGATGCAGGACAAGCCCCCAACAAAGTCTGACCTCAATGGGGTGCCGGACGAAATCCCATCTCCTTGTGGAGAGAATGGGGAAAATGGATCCTCATCCGATGCTGATCCATCAGGCCCTAAGATGTAACATCAAAATAAtcgtcaataaaaaaaaataaacagtgtgagAAACTACTTAGTAAGAACGAGGGTGGGAGAGTGTGGAGAGGAATCTCCTCGCCTGAGGCTGTGCAAGACTCGACCTGGAAGCTGTTGAGTAAAAGACATAAGGGGGAATTCACTAAAGGTATACTTCATTTTCCGTGTTCCGCTCCATCTAGCGCACAACTGAGCACTGAAATCATTTGCACACGCACTGCTGTACATGCACAAGTCCACGTGGACTCAAAAATCGAGCTGCAAACAGACAGTAGGGGTGTGCGATATTTATCATCCAGGGTGATATCATCATTTTGACAATGTACTAGCTGACATTATTGAATGTCGTGCTGTTTGAAGAAAGCAAAAAAACGTTTTAAGAGTCTGATAGCATTTACTGCAAGATGTAGCATATTAGTACAATTAGATTTTTCTTATGGTTAAGCTtatgaaagaaaaatatatatccaACCCaaactcattctgattacgtagcCCTATTTAGATTTCTGG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121024-1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ANO8 (anoctamin 8).

Ensembl:

ensembl_id ENSDART00000108628

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008448 lncRNA downstream 797 5957009 ~ 5964371 (-) True XLOC_003876
TCONS_00007426 lncRNA downstream 99593 5857278 ~ 5865575 (-) True XLOC_003873
TCONS_00008748 lncRNA downstream 190266 5773096 ~ 5774902 (-) True XLOC_003872
TCONS_00008447 lncRNA downstream 401747 5556890 ~ 5563421 (-) True XLOC_003871
TCONS_00008747 lncRNA downstream 450004 5514378 ~ 5515164 (-) True XLOC_003870
TCONS_00008449 lncRNA upstream 3962 6005807 ~ 6006741 (-) True XLOC_003878
TCONS_00007433 lncRNA upstream 45228 6047073 ~ 6048341 (-) True XLOC_003879
TCONS_00008749 lncRNA upstream 84455 6086300 ~ 6096366 (-) True XLOC_003882
TCONS_00007440 lncRNA upstream 185537 6187382 ~ 6188413 (-) True XLOC_003883
TCONS_00007445 lncRNA upstream 202725 6204570 ~ 6206556 (-) True XLOC_003884
TCONS_00007429 mRNA downstream 11520 5945186 ~ 5953648 (-) False XLOC_003875
TCONS_00007430 mRNA downstream 11532 5946767 ~ 5953636 (-) True XLOC_003875
TCONS_00007427 mRNA downstream 25307 5933635 ~ 5939861 (-) False XLOC_003874
TCONS_00007428 mRNA downstream 25708 5934188 ~ 5939460 (-) True XLOC_003874
TCONS_00007425 mRNA downstream 99424 5855923 ~ 5865744 (-) False XLOC_003873
TCONS_00007432 mRNA upstream 41897 6043742 ~ 6048490 (-) False XLOC_003879
TCONS_00007434 mRNA upstream 49442 6051287 ~ 6068425 (-) False XLOC_003880
TCONS_00007435 mRNA upstream 50186 6052031 ~ 6069081 (-) False XLOC_003880
TCONS_00007436 mRNA upstream 58690 6060535 ~ 6068375 (-) False XLOC_003880
TCONS_00007437 mRNA upstream 62188 6064033 ~ 6070192 (-) True XLOC_003880
TCONS_00007400 other downstream 2011331 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 4876653 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 4985420 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 5505238 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 5613467 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 70115 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 195431 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 778863 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 942455 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 1114402 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_03903266_03927695.mRNA True 4281 mRNA 0.50 16 CI01000057 3902149 ~ 3927695 (-)
bowfin (Amia calva) AMCG00006055 True 3369 mRNA 0.58 17 CM030142.1 14742197 ~ 14756210 (+)