RNA id: TCONS_00008447


Basic Information

Item Value
RNA id TCONS_00008447
length 663
lncRNA type sense_over
GC content 0.47
exon number 3
gene id XLOC_003871
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5554163 ~ 5563498 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttgagccagtttaaaaaagcaaacttgctttttatatgatttatatttttacatcctGTATGTAGATGTTCAGCGCCACATCATTGGCTTCTGCAGATGACAATTAAACAGACAAATCATGCAGAGTTCAGTCGAGTCCTTCATAACTGTGCTGGAGTCATACAGAGGAAGAGACAAAGTGATACGGACCCTCTGCTATGGCTCTCAGCTGGTAGGGGGTGTCCTGTCAGGAAAGAGCCCTCAGTCTTCATTGGGAAAGAGTCTCCTGCTGTTCTCAGCTCAGTTGAGTCACTGCAGAACCACACTCAGGCTCTTTGATGACCTGTCTATGCTGGCGTACTCCTCTGGCTATGGATTAGGAGGCTCGGAGGAAGATGCTCGGGTGCGCTGGATGTCTGTTCTGAGTAACGTAGCTGATCAGTTGTATTATCCCTGTGAGCACATCGCCTGGGCCGCAGATGCAGAGCTCATCAAAACTAAATCTGACCGCTGGTGGGTGCTGAGCACAGGCCTCTGGGGTGCATCGCTGGTCCTCGGCATACTCAGGTGAAGGCCGAGAGCAGACAGGACAATatgtacatatactgtatacacagtCTTGTGGAAAAGTTGCCACATTCTATTAAATCCAATGGTTTTCTGTATTAGTATGTAACaata

Function

GO:

id name namespace
GO:0016559 peroxisome fission biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008747 lncRNA downstream 41726 5514378 ~ 5515164 (-) True XLOC_003870
TCONS_00008745 lncRNA downstream 624891 4786977 ~ 4931999 (-) True XLOC_003868
TCONS_00008746 lncRNA downstream 704742 4809715 ~ 4852148 (-) True XLOC_003869
TCONS_00008446 lncRNA downstream 960917 4492467 ~ 4595973 (-) False XLOC_003868
TCONS_00008744 lncRNA downstream 1086216 4435273 ~ 4470674 (-) True XLOC_003867
TCONS_00008748 lncRNA upstream 209675 5773096 ~ 5774902 (-) True XLOC_003872
TCONS_00007426 lncRNA upstream 293857 5857278 ~ 5865575 (-) True XLOC_003873
TCONS_00008448 lncRNA upstream 393588 5957009 ~ 5964371 (-) True XLOC_003876
TCONS_00008449 lncRNA upstream 442386 6005807 ~ 6006741 (-) True XLOC_003878
TCONS_00007433 lncRNA upstream 483652 6047073 ~ 6048341 (-) True XLOC_003879
TCONS_00007422 mRNA downstream 769807 4492467 ~ 4787083 (-) False XLOC_003868
TCONS_00007423 mRNA downstream 960459 4594475 ~ 4596431 (-) False XLOC_003868
TCONS_00007420 mRNA downstream 1254639 4296726 ~ 4302251 (-) True XLOC_003863
TCONS_00007418 mRNA downstream 1256059 4295835 ~ 4300831 (-) False XLOC_003863
TCONS_00007419 mRNA downstream 1256059 4296560 ~ 4300831 (-) False XLOC_003863
TCONS_00007425 mRNA upstream 292502 5855923 ~ 5865744 (-) False XLOC_003873
TCONS_00007427 mRNA upstream 370214 5933635 ~ 5939861 (-) False XLOC_003874
TCONS_00007428 mRNA upstream 370767 5934188 ~ 5939460 (-) True XLOC_003874
TCONS_00007429 mRNA upstream 381765 5945186 ~ 5953648 (-) False XLOC_003875
TCONS_00007430 mRNA upstream 383346 5946767 ~ 5953636 (-) True XLOC_003875
TCONS_00007400 other downstream 1603053 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 4468375 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 4577142 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 5096960 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 5205189 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 508539 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 633855 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 1217287 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 1380879 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 1552826 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01099603_00000093_00002057.mRNA True 428 mRNA 0.52 3 CI01099603 93 ~ 2057 (-)